barSeed - Barley Seed Development Database

Probe CUST_30839_PI390587928

Source Contig U35_16829

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30839_PI390587928	Hv_44K_v2	GCAAACTCATAACCTATATCGGTTAATATATTTGGCCATTTGCCACATTGTCTTTTTGCA	2269	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.219	1.728	1.177	0.758	0.327	0.313
Raw	9743.907	11944.540	7065.927	7228.120	1076.295	1131.775

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15242.3	2584	2e-24	2485 - 2544	100	60 / 60	plus	ABC06096
MLOC	MLOC_15242.1	2348	2e-24	2245 - 2304	100	60 / 60	plus	ABC06096
JLOC1	JLOC1_10447.1	2344	8e-25	2245 - 2304	100	60 / 60	plus
Harvest21	ABC06096	2345	3e-25	2270 - 2329	100	60 / 60	plus	ABC06096
Harvest35	U35_16829	2345	3e-25	2270 - 2329	100	60 / 60	plus

Contig Sequence (2345 bp)

>U35_16829 2345 Hv_44K_v2
GCCCGCCGCCGCCCGCCCGCCGGGACCCAGCCCAAGCTCGAGCGCCAGCCAGCCATGGCC
ATCGGATCTCTCATCGCCTCCAGGCTGGCCCGCTCCGGCCACGCCCTCGCCGCGCGCGCC
ATCGCCCAGGCTCCCAGGACCCACCAGCATCATCACGCGGCGTCCCCCCTGCTCTCCAGG
CTCGGAGCCGTGGCCCGCGCTTTCAGCTCGAGGCCCGCTGCCGCAGATGTCATCGGGATC
GATTTGGGTACTACGAACTCGTGTGTCTCCGTCATGGAAGGAAAGACACCACGGGTGATT
GAGAATGCTGAAGGCGCGCGGACAACACCCTCCATTGTTGCCACCAACAACAAAGAAGAG
ATCTTGGTTGGCATAACTGCCAGTCGACAGGCAGTAACAAATGCCGAGAACACAGTTCGT
GGGTCCAAGCGACTGATTGGTAGAGCTTTTGATGACCCCCAGACACAGAAGGAAATGGAT
ATGGTGCCTTACAAGATTGTCAGGGGAACAAATGGTGATGCCTGGGTGGAGATGGCCGGG
AAGGCATACTCCCCAAGCCAGATTGGTGCATTTGTTCTTACCAAGATGAAGGAAACTGCA
GAGGCTTACCTTGGCAAGTCGGTCTCCAAGGCTGTTATTACAGTCCCAGCTTATTTCAAT
GATGCTCAACGTCAGGCCACCAAGGATGCTGGCAGGATTGCTGGGTTGGAGGTGATGAGG
ATCATCAATGAGCCCACTGCTGCAGCTCTGTCGTACGGAATGAACAACAAGGAGGGCCTG
ATTGCTGTATTTGACTTGGGTGGTGGCACATTTGATGTATCAATCCTTGAGATTTCTAAT
GGCGTTTTTGAGGTCAAGGCGACCAATGGAGATACTTTCCTTGGTGGTGAAGACTTTGAT
GCTGCATTGTTAAACTACCTGGTTAGTGAATTTAAGAACTCTGACAAGATTGATCTGAGC
AAGGACAAGTTAGCACTGCAAAGGCTCAGGGAAGCTGCTGAGAAGGCGAAGGTTGAGCTT
TCCTCGACCCCACAGACTGAAATCAATCTCCCCTTCATCACAGCAGATGACTCTGGTGCG
AAGCATTTCAACATTACCTTGACCAGATCAAAGTTTGAGTCTCTTGTGGGTAATCTCATT
GAGAGAACACGCATCCCATGCACAAACTGCCTCAAGGATGCTGGTGTTTCTGCAAAGGAG
GTTGATGAGGTTCTACTGGTTGGTGGTATGACAAGGGTGCCAAAGGTCCAGGATATTGTT
TCTCAGATATTCGGCAAGTCGCCAAGCAAGGGTGTCAATCCTGATGAAGCTGTTGCCATG
GGAGCTGCCATTCAGGGTGGCATCTTGAGGGGTGATGTGAAGGAGCTCTTGTTGCTGGAT
GTCACACCACTTTCCCTTGGTATTGAGACTCTTGGAGGCATCTTCACAAGGCTAATCAAC
AGGAACACTACAATTCCAACCAAGAAGAGCCAGACCTTCTCCACTGCTGCAGATAACCAG
ACACAGGTTGGAATCAAGGTGCTTCAGGGTGAGAGGGAGATGGCTACAGATAACAAGCTT
CTTGGTGAATTCCAGCTTGAAGGCATTCCACCAGCCCCGAGGGGTATGCCACAGATTGAG
GTCACTTTTGACATTGATGCCAATGGTATTGTCAAGGTGTCAGCAAAGGATAAGTCCACG
GGCAAAGAGCAGGATATCACCATCAAATCTTCAGGTGGTTTGTCTGACAGTGACATCGAA
AAGATGGTGAAGGAGGCTGAGCTAAATTCTCAGAGGGATCAGGAAAGGAAGTCTTTGATT
GACCTCAGGAACTCTGCCGATACCACCATCTACAGCATCGAGAAGAGCGTCAGCGAGTAC
AAAGACAAGGTTCCTGCTGAAGTCGTCACGGAAATCCAGTCTGCTGTTTCTGATCTGAGA
GCAGCAATGGCTGGTGATGATTTGGACGCCATCAAGCAGAAGCTGGAGGCAGCGAACAAG
GCAGTCTCAAAGATTGGACAGCACATGCAGGGTGGTGGCGGCGCTGCCGGCGGCGACGGT
GACAGCGGCAGCAGTGGTGGCGACCAGACTCAGGAAGCTGAGTACCAGGACCCCAAGGAG
GCCAAGATGTAGATTTGTTCTGCATCAGGTTTCTTCTACTTTTTTGTGTACCCAGTTTAG
GAAGTTAATATCTTTATCCTACCTCCGTCTGCTTAGGTTTCTAAGAGGGCTACGACGATA
CCTGTAACATTTTGGCAATTGTTTGAATTGCGGATAAATTGTGAGAGGAGCAAACTCATA
ACCTATATCGGTTAATATATTTGGCCATTTGCCACATTGTCTTTTTGCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_16829 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g31486.1	685	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi4g33878.1	681
Arabidopsis v10	AT5G09590.1	682	\| Symbols: MTHSC70-2, HSC70-5 \| mitochondrial HSO70 2 \| chr5:2975721-2978508 FORWARD LENGTH=682