barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_30830_PI390587928Hv_44K_v2CATGTGTTGGTGTGATTTTACTGAACGCAACCATTGTCCGTTGATTCTGACTGTAAAAAA812GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4561.4411.1330.8320.2670.279
Raw 4166.0576315.6334441.6035130.247576.256656.486



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_1777.223865e-222291 - 234510055 / 55plus
JLOC1JLOC1_1777.123745e-222279 - 233310055 / 55plus
Harvest35U35_9888833e-25813 - 87210060 / 60plus



Contig Sequence (883 bp)

>U35_988 883 Hv_44K_v2
ACCGGCAATTGTAGAACTTGCGGAGGATAGGCATTGGAGGGTTCGCCTTGCAATAATAGA
GTACATCCCTCTGCTGGCTAGTCAGTTAGGTGTTGGGTTTTTTGATGACAAACTGGGGGC
ACTTTGCATGCAATGGTTGGAAGATAAGGTTTTCTCGATCAGAGAAGCTGCCGCAAACAA
CTTGAAGCGACTGGCGGAGGAGTTTGGTCCAGAGTGGGCAATGCAACATATTATTCCTCA
GGTGTTGGAGAAGATAAACAACCCACATTATCTGTATCGCATGACCATCCTCCAAGCCAT
TTCGTTGCTAGCCCCTGTCATGGGTGCAGAAATAACATGCCAAAAGCTTCTCCCTGTTGT
CATCAATTCATCGAAGGACAGAGTGCCGAACATCAAGTTCAATGTCGCGAAAGTTCTTCA
GTCGCTTGTGCCAATCCTTGATCAATCTGTCGCTGAAAAGACTGTGAAACCATGCCTCGT
CGAGCTCAGCGAGGACCCTGATGTGGATGTACGATACTATGCAAACCAGGCCCTGCAGGC
TTGTGACCAAATCATGATGTCTAGCTAACTAAGCTGCTGCTGTCACGTTCTTTAGAAGCT
ATTCTTAGTCCAGCTTTGGAGTACATGTAATTTACCTTATGAGTCCAAGAGTTCTTTCTA
GCCCAGTAACCGACCTATACTTCCATGCTGATAATGGATGGGCTCCGTTCCCCTTTTGTT
GTTATTAATGTTGTATAATTGAGCAACGGGACACGTTGTTTCAATGGTGTGCATACATTG
GTAGTTTGAACTTGATTTCTGTCATAAAAATCCATGTGTTGGTGTGATTTTACTGAACGC
AACCATTGTCCGTTGATTCTGACTGTAAAAAAAAAAAAAAAAA



Homology of Contig U35_988 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os09g07510.25887e-121protein|HEAT repeat family protein, putative, expressed
Brachypodium v1_2Bradi4g08720.15882e-123
Arabidopsis v10AT3G25800.15878e-110| Symbols: PDF1, PR 65, PP2AA2 | protein phosphatase 2A subunit A2 | chr3:9422822-9425783 REVERSE LENGTH=587