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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_30828_PI390587928Hv_44K_v2CCATGTGTTGGTGTGATTTTACTGAACGCAACCATTGTCCGTTGATTCGCTGTATTGCAC2154GeneList: turquoise
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.4181.4541.1340.8220.2670.259
Raw 4239.8336653.4334649.1575343.033603.228635.384



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_1777.223865e-222290 - 23519760 / 62plus
JLOC1JLOC1_1777.123745e-222278 - 23399760 / 62plus
Harvest35U35_98922353e-252155 - 221410060 / 60plus



Contig Sequence (2235 bp)

>U35_989 2235 Hv_44K_v2
GGGTGCCTTTACCTCGTTCTCCGGTTCCCCGTCCCATTCCATCCACCGCGTCCAGACACA
ATCTTACCGGCGACGCCTCGCGACCTCCTCGCCTCCTCGCCCCCCTTCGCCGCCGCGGGG
ACCCGTTCTGATCCCGTCAGTTGTAGAAGTAACTGATTAGCCTGATGGCTATGGTCGATG
AGCCTCTCTATCCAATTGCTGTGCTGATAGATGAGCTTAAAAATGAAGATATTCAGTTGC
GCCTGAACTCCATCAGAAGACTTTCCACTATTGCACGGGCACTTGGAGAAGAGCGAACCA
GGAAGGAACTGATTCCTTTCCTCAGCGAAAACAATGATGATGAAGATGAAGTGCTTCTTG
CAATGGCTGAAGAATTGGGTGTGTTCATTCCTTATGTTGGTGGTGTAGAGCATGCTCATG
TTTTGCTTCCACCATTGGAGACATTGTCTACGGTGGAGGAAACCTGTGTCCGAGACAAAG
CAGTTGAGTCGCTGTGCCGCATTGGTGCACAGATGAAAGAAAACGACATTGTTGACTATT
TCATTCCAGTAGTAAAGAGGCTAGCAGCTGGTGAGTGGTTTACAGCTCGAGTGTCATCCT
GTGGTCTTTTCCATATAGCCTATCCAAGTGCCACCGATCCGTTGAAAACAGAATTGAGGA
CTATTTATGGCCAGTTATGCCAAGATGATATGCCTATGGTCAGAAGGGCAGCTGCATCAA
ATCTTGGGAAGTTTGCTGCCACTGTAGAACAGAGCCATTTGAAGACAGAAATCATGTCGA
TCTTTGATGATCTTACCCAAGATGATCAAGATTCAGTACGTTTGTTGGCAGTTGAAGGCT
GTGCCGCTCTTGGAAAATTGTTAGAACCCCAAGATTGTGTAGCACATATCCTTCCTGTCA
TTGTCAATTTCTCCCAGGATAAATCTTGGCGTGTCCGTTATATGGTTGCAAATCAATTGT
ATGAGCTCTGCGAGGCAGTTGGCCCCGAGCCTACAAGAGCGGACCTGGTGCCTGCATATG
TTCGTCTCCTTCGTGATAATGAAGCTGAAGTGAGGATAGCAGCTGCCGGAAAAGTTACTA
AGTTCTGTAGGATATTAAGTCCACAGCTTGCAATTCAGCACATTCTGCCATGTGTTAAGG
AATTATCATCAGACTCGTCTCAGCATGTTCGCTCAGCTTTGGCTTCAGTAATCATGGGAA
TGGCCCCTGTCTTGGGGAAGGATGCTACCATCGAACAACTTCTTCCTATTTTTCTTTCTT
TGCTGAAGGACGAATTTCCTGATGTTCGACTCAACATAATCAGCAAGCTTGATCAAGTTA
ATCAGGTCATTGGAATTGACTTGCTGTCGCAATCTCTATTACCGGCTATTGTAGAACTTG
CGGAGGATAGGCATTGGAGGGTTCGCCTTGCAATAATAGAGTACATCCCTCTGCTGGCTA
GTCAGTTAGGTGTTGGGTTTTTTGATGACAAACTGGGGGCACTTTGCATGCAATGGTTGG
AAGATAAGGTTTTCTCGATCAGAGAAGCTGCCGCAAACAACTTGAAGCGACTGGCGGAGG
AGTTTGGTCCAGAGTGGGCAATGCAACATATTATTCCTCAGGTGTTGGAGAAGATAAACA
ACCCACATTATCTGTATCGCATGACCATCCTCCAAGCCATTTCGTTGCTAGCCCCTGTCA
TGGGTGCAGAAATAACATGCCAAAAGCTTCTCCCTGTTGTCATCAATTCATCGAAGGACA
GAGTGCCGAACATCAAGTTCAATGTCGCGAAAGTTCTTCAGTCGCTTGTGCCAATCCTTG
ATCAATCTACTGTGAAACCATGCCTCGTCGAGCTCAGCGAGGACCCTGATGTGGATGTAC
GATACTATGCAAACCAGGCCCTGCAGGCTTGTGACCAAATCATGATGTCTAGCTAACTAA
GCTGCTGCTGTCACGTTCTTTAGAAGCTATTCTTAGTCCAGCTTTGGAGTACATGTAATT
TACCTTATGAGTCCAAGAGTTCTTTCTAGCCCAGTAACCGACCTATACTTCCATGCTGAT
AATGGATGGGCTCCGTTCCCCTTTTGTTGTTATTAATGTTGTATAATTGAGCAACGGGAC
ACGTTGTTTCAATGGTGTGCATACATTGGTAGTTTGAACTTGATTTCTGTCATTCCATGT
GTTGGTGTGATTTTACTGAACGCAACCATTGTCCGTTGATTCGCTGTATTGCACTTTTAA
AAAAAAAAAAAAAAA



Homology of Contig U35_989 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os09g07510.35840.0protein|HEAT repeat family protein, putative, expressed
Brachypodium v1_2Bradi4g08790.45840.0
Arabidopsis v10AT3G25800.15870.0| Symbols: PDF1, PR 65, PP2AA2 | protein phosphatase 2A subunit A2 | chr3:9422822-9425783 REVERSE LENGTH=587