barSeed - Barley Seed Development Database

Probe CUST_30827_PI390587928

Source Contig U35_28805

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30827_PI390587928	Hv_44K_v2	TGGATTATAATGCTGACCGTGCTTGGTATGATTGTGAAGAACACAACACCGTGTTTGATG	239	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.347	1.118	1.266	0.825	0.626	0.572
Raw	133.228	150.201	169.252	154.202	45.506	45.412

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369050	4231	2e-24	1280 - 1339	100	60 / 60	plus	ABC12582
MLOC	MLOC_11559.3	1315	2e-24	656 - 715	100	60 / 60	minus	None
MLOC	MLOC_11559.2	2018	2e-24	659 - 718	100	60 / 60	minus	None
MLOC	MLOC_11559.1	2038	2e-24	682 - 741	100	60 / 60	minus	None
JLOC1	JLOC1_7663.1	2189	8e-25	1356 - 1415	100	60 / 60	plus
Harvest21	ABC27874	299	3e-25	240 - 299	100	60 / 60	plus
Harvest35	U35_28805	299	3e-25	240 - 299	100	60 / 60	plus

Contig Sequence (299 bp)

>U35_28805 299 Hv_44K_v2
TGCAGCATTCGGCCGNGGCTTGGCTAGGCGGGCATACACCCCGTTACGCAGTATCCCCTT
GGGATCATGTTTCTCCCTCGCCTGCTCCTGTGAGGGCTTCAGGTTCATCAAAGGGTCTTC
GTATTCAAGTTCCAGTGGAAGATCTCATCAGCTCACCTTTTCAAATGATGCTGAAGCTGA
TAGAAGCCTCTCAGCTGCTGATAGGAATTATGAGATTACCGAGGAAATGATGCAAGAGAT
GGATTATAATGCTGACCGTGCTTGGTATGATTGTGAAGAACACAACACCGTGTTTGATG

Homology of Contig U35_28805 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None