- Probe CUST_30820_PI390587928
- Source Contig U35_16833
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30820_PI390587928 | Hv_44K_v2 | TTTACAGGCAAAAGGAACAATTCAGCGATGGTGTTGGGTACAGTTGGATTGATGGACTGA | 285 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.016 | 1.142 | 1.690 | 1.268 | 0.545 | 0.487 |
| Raw | 537.130 | 936.066 | 1228.689 | 1462.685 | 222.632 | 215.164 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363899 | 2150 | 2e-24 | 1490 - 1549 | 100 | 60 / 60 | plus | ABC06228 |
| MLOC | MLOC_72774.1 | 1862 | 2e-24 | 1238 - 1297 | 100 | 60 / 60 | plus | ABC06228 |
| MLOC | MLOC_72774.3 | 1421 | 2e-24 | 959 - 1018 | 100 | 60 / 60 | plus | ABC06228 |
| MLOC | MLOC_72774.4 | 1583 | 2e-24 | 873 - 932 | 100 | 60 / 60 | plus | ABC06228 |
| JLOC1 | JLOC1_48424.1 | 1962 | 8e-25 | 1260 - 1319 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06227 | 881 | 3e-25 | 286 - 345 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06228 | 1859 | 6e-22 | 1108 - 1167 | 97 | 58 / 60 | plus | ABC06228 |
| Harvest35 | U35_16833 | 656 | 3e-25 | 286 - 345 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_16834 | 1859 | 6e-22 | 1108 - 1167 | 97 | 58 / 60 | plus |
Contig Sequence (656 bp)
>U35_16833 656 Hv_44K_v2 GGTTATCTTTACTTTATAAGGCACCAAACAAGAAGGAACTCCATGAGGAGACGTGTAGGA AGATAAAAGCTCTTCATTTATATGATTGTTTGAGAGCAAACAAAGCAACTTCTGCCTGGG GTCTTGAGGCTCGTGTTCCATTCCTCGACAAAAACTTCATCAATGTAGCAATGGACCTGG ATCCCGAATGTAAGATGATAAGACGTGATCTTGGCCGGATTGAGAAATGGGTTCTGCGTA ATGCATTTGATGATAATGAGAAGCCCTATTTACCCAAGCACATTCTTTACAGGCAAAAGG AACAATTCAGCGATGGTGTTGGGTACAGTTGGATTGATGGACTGAAGGACCATGCTAGTG CACATGTGTCGGATTCCATGATGACGAACGCTAGCTTTGTTTACCCTGAGAACACACCCA CAACTAAGGAGGCCTACTATTACAGGACTGTGTTCGAGAAATTCTATCCCAAGAATGCTG CTAGGCAAACGGTGCCAGGAGGTCCCAGCGTCGCATGCAGCACCGCTAAAGCTGTCGAAT GGGATGCTGCCTGGTCCAAGCTCCTCGACCCGTCTGGCCGCGCCGCTCTTGGCGTGCATG ATGCGGCGTACGAAGAAAAGGCTCCTGCATCGGTCGATCCTGTCGTGGATGACGTC
Homology of Contig U35_16833 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g15420.1 | 592 | 1e-134 | protein|asparagine synthetase, putative, expressed |
| Brachypodium v1_2 | Bradi2g21050.1 | 592 | 4e-139 | |
| Arabidopsis v10 | AT5G10240.1 | 578 | 4e-123 | | Symbols: ASN3 | asparagine synthetase 3 | chr5:3212934-3216418 REVERSE LENGTH=578 |