barSeed - Barley Seed Development Database

Probe CUST_30819_PI390587928

Source Contig U35_16834

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30819_PI390587928	Hv_44K_v2	CTCAACGGTTGGTTTTCAAACTGCAAAGTTCCATTAATAAATTCCAATGTTGGTTTCTAG	1781	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK353762	2241	7e-23	2177 - 2236	98	59 / 60	plus	ABC06228
JLOC1	JLOC1_24075.2	2019	8e-25	1958 - 2017	100	60 / 60	plus
JLOC1	JLOC1_24075.1	2029	8e-25	1968 - 2027	100	60 / 60	plus
Harvest21	ABC06228	1859	3e-25	1782 - 1841	100	60 / 60	plus	ABC06228
Harvest35	U35_16834	1859	3e-25	1782 - 1841	100	60 / 60	plus

Contig Sequence (1859 bp)

>U35_16834 1859 Hv_44K_v2
AGATCTATAATCATGAAGAACTGAAAGCTAAGCTGAAATCACATAAATTCCAAACTGGTA
GTGATTGTGAAGTTATTGCTCACCTATATGAGGAATATGGGGAAGAATTTGTGGATATGT
TGGATGGCATGTTCTCATTTGTGCTTCTTGACACGCGTGATAAAAGCTTCATAGCTGCCC
GTGACGCTATTGGCATCTGTCCTTTATACATGGGCTGGGGCCTTGATGGATCCATTTGGT
TCTCTTCGGAGATGAAGGCGTTGAGTGATGATTGCGAGCGCTTCATATCGTTCCCCCCTG
GACACTTGTACTCAAGCAAAACAGGTGGCCTAAGGAGGTGGTACAACCCTCCATGGTTTT
CAGAAAGCATTCCCTCAGCCCCCTATGATCCTCTTCTCATCCGAGAGAGTTTTGAGAAGG
CTGTTCTCAAGAGGCTAATGACTGATGTGCCATTTGGTGTTCTCTTGTCTGGTGGGCTTG
ACTCTTCTTTGGTGGCTTCTGTTGTTTCACGCCACTTGGCAGAAACAAAAGTTGCCAGGC
AGTGGGGAAACAAACTGCACACCTTTTGCATTGGTTTGAAGGGTTCTCCTGATCTTAAAG
CTGCTAAGGAAGTTGCTGACTACCTTGGCACAGTCCATCATGAATTACACTTCACAGTGC
AGGAGGGCATTGATGCTTTGGAAGAAGTTATTTATCACATTGAGACGTATGATGTAACGA
CCATTAGAGCAAGTACCCCAATGTTTCTAATGTCTCGGAAAATCAAATCGTTGGGTGTGA
AGATGGTTCTTTCGGGAGAAGGTTCCGATGAAATATTTGGTGGTTATCTTTATTTTCACA
AGGCACCAAACAAAAAGGAATTCCATGAGGAAACATGTCGGAAGATAAAGGCTCTCCATT
TATATGATTGTTTGAGAGCAAACAAAGCAACTTCTGCCTGGGGTCTCGAGGCTCGTGTTC
CATTCCTCGACAAAAACTTCATCAATGTAGCAATGGACCTGGATCCGGAATGTAAGATGA
TAAGACGTGATCTTGGCCGGATCGAGAAATGGGTTCTGCGTAATGCATTTGATGATGATG
AGAAGCCCTATTTACCCAAGCACATTCTTTACAGGCAAAAGGAACAGTTCAGCGATGGTG
TTGGGTACAGTTGGATTGATGGATTGAAGGACCATGCTAATGCACATGTGTCAGATTCCA
TGATGACAAACGCCAGCTTTGTTTACCCTGAAAACACACCCACAACAAAAGAAGCCTACT
ATTATAGGACAGTATTTGAGAAGTTTTATCCCAAGAATGCTGCTAGGCTGACGGTGCCAG
GAGGTCCCAGCGTTGCATGCAGCACCGCGAAAGCTGTTGAATGGGACGCCGCCTGGTCCA
AGCTCCTCGACCCGTCTGGCCGTGCTGCTCTCGGTGTGCATGACGCAGCATACGAAGAGG
AAAAGGCTCCCGCATCGGTCGATCCCATCTTGGAGAATGCCTTCCGTTCACCAGCCCATG
GAGAGAGCACCCTAGTCAAAACCGTTGTTCCAACAGCTGCTGTTTAACCTTCCACCTCAT
GGTTTCATATAGAATGCTCGAGAAAATGTTGTCACTTAGTTTAATTCTAGCTTCATTGCA
GCTTGTCTGTAGCTTCAATCATTCAGTGTAGAAATTGCTTTCCTCTATTTTCCTTGACGC
TTGCTGTTATGTTTTGCTTTCGCATGCATGTACTAAGTTTGTTTATGTGGTGAGCATTGC
ATTTGTAAATATTTCACCATTGTTGTGCTATCCTTGAGTTGCTCAACGGTTGGTTTTCAA
ACTGCAAAGTTCCATTAATAAATTCCAATGTTGGTTTCTAGAAAAAAAAAAAAAAAAAA

Homology of Contig U35_16834 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g15420.1	592	protein\|asparagine synthetase, putative, expressed
Brachypodium v1_2	Bradi2g21050.1	592
Arabidopsis v10	AT5G10240.1	578	\| Symbols: ASN3 \| asparagine synthetase 3 \| chr5:3212934-3216418 REVERSE LENGTH=578