barSeed - Barley Seed Development Database

Probe CUST_30816_PI390587928

Source Contig U35_990

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30816_PI390587928	Hv_44K_v2	ATCAGCTTCTTCTTTGGCTTTCTGCAGGATGCTACCATCGAACAACTTCTTCCTATTTTT	554	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.698	1.017	1.893	1.695	0.685	0.717
Raw	55.689	123.796	206.890	298.502	42.039	47.943

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC02939	658	3e-25	555 - 614	100	60 / 60	plus
Harvest35	U35_990	659	3e-25	555 - 614	100	60 / 60	plus

Contig Sequence (659 bp)

>U35_990 659 Hv_44K_v2
CCTCAATTTTATCTCCAATCCTAATTTTGCTGAGATGTTCATCCACAATCCGAATCAATA
CTGGTATGAAAGAAAGAGAGATAATGCATTATTGATTAGGATTGCACCCAAGATAGTACT
TTTTTTTAATGGTTAACGCGTCAAATAACATCATATTCATATTCTACATAGTTTTCTAAT
TAAATTCCATATATAAAATGTTAAATTTGGAGTTACGGTTTAAAAGATATGAATATTTTT
AAAAACATTTGATATGTAATCACTTCTTCGAATTGTTGTTATCTTGGATTTCTCAGAGTG
TCAGCTAGAACAATGCAAATGTTTTTGGTTTGTCTTCCATATGCACTGGTCCATCTGCCA
GTTACATGTGCATGTTTTGTTACGATATTTGTATCCAGCATGTGAAAGGCTTGTTCTTTA
GTTTACTCCTCTATTGCTAGTTGCCACAAATCAAATCTATTTATTTCGTGTATCTGTGTG
ATACTAGTATAATTTGTTGTCAATAGTTTCTGCTCTTCATTCATTACTATCAGCAATTCA
GTCGTTGGAAACTGATCAGCTTCTTCTTTGGCTTTCTGCAGGATGCTACCATCGAACAAC
TTCTTCCTATTTTTCTTTCTTTGCTGAAGGACGAATTTCCTGATGTTCGACTCAACATA

Homology of Contig U35_990 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None