barSeed - Barley Seed Development Database

Probe CUST_30806_PI390587928

Source Contig U35_9070

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30806_PI390587928	Hv_44K_v2	GCTGTATTACCTGTGTGTTGGATGTAAAAACACATATCATATCTGTGAAAGAAGAAATGC	397	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44354.3	9670	2e-24	8334 - 8393	100	60 / 60	plus	ABC18988 ABC49862
MLOC	MLOC_44354.6	6931	2e-24	6858 - 6917	100	60 / 60	plus	ABC18988 ABC49862
MLOC	MLOC_44354.7	6400	2e-24	6327 - 6386	100	60 / 60	plus	ABC18988 ABC49862
MLOC	MLOC_44354.2	8428	2e-24	8335 - 8394	100	60 / 60	plus	ABC18988 ABC49862
JLOC1	JLOC1_28745.2	7163	8e-25	7071 - 7130	100	60 / 60	plus
JLOC1	JLOC1_28745.1	6707	8e-25	6615 - 6674	100	60 / 60	plus
Harvest21	ABC18988	486	3e-25	30 - 89	100	60 / 60	minus	ABC18988
Harvest35	U35_9070	486	3e-25	398 - 457	100	60 / 60	plus

Contig Sequence (486 bp)

>U35_9070 486 Hv_44K_v2
GGCAAAGTTCAACATTCCAGCGTGCAGGGCTTCATAATCTTGATGCACAAGCGAAGCCGC
TTCGGGTCCTGAGGATAGGAGTTTGATGGCAGATGGGACTGTGCTAAGGGGGTTTCAAGT
TTTGGACATGGACATGCAGGTTGGTAATCAAGCTGTGACTCGGATCGGCGAGACGAGCAA
GGGTTTGACAAGTTTTTCGGTTATCTCGGATACCCGCTGTTGATATAGTTCTTTGCTGCG
CCTCACCAAGCTGCGGCGCTGACTGGGTTTTCTCTTCGACATACCCATATATAGATAGGG
AAAACATTCCTTGTCATTTCTTTTGTTCTTTCCTTTTTAACATCTCATTTTCATTCATAC
ATAGGTTCCATTGTTTCAAACATAGTGGGAGCAACTGGCTGTATTACCTGTGTGTTGGAT
GTAAAAACACATATCATATCTGTGAAAGAAGAAATGCAACTTTATTTGCAAAAAAAAAAA
AAAAAA

Homology of Contig U35_9070 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None