barSeed - Barley Seed Development Database

Probe CUST_30796_PI390587928

Source Contig U35_9080

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30796_PI390587928	Hv_44K_v2	GAAGGATGATAACAAGACACATTTGGAAGAGATGAAAAGGCTGCAGAGTGCTTTGGCTGA	662	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.377	1.273	1.296	0.767	0.520	0.505
Raw	591.855	768.042	764.828	618.264	169.810	180.690

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57784.1	2821	7e-23	1589 - 1648	98	59 / 60	minus	ABC07040
JLOC1	JLOC1_37507.1	2924	4e-23	1165 - 1224	98	59 / 60	plus
Harvest21	ABC19103	725	3e-25	663 - 722	100	60 / 60	plus
Harvest35	U35_9080	725	3e-25	663 - 722	100	60 / 60	plus

Contig Sequence (725 bp)

>U35_9080 725 Hv_44K_v2
GGCAGCGAGTACCGTATCGACGGCCGACTGGTCACGTGGGACGACTACAACGCCAAGCTT
AGATCCCTCGGCATCCTCGTCAAGGCCCGCAACTTCCTCGTTTTCCAGGGTGACGTGGAA
TCCATTGCCTCCAAGAATCCTAAGGAGCTCACTGCACTTCTGGAGCAGATTGCCGGCTCT
GACGAGCTCAGGAGGGAGTACGACGGATTGGAGGAACAGAAAACCAGTGCCGAAGAGAAA
TCTGCACTTGTCTATCAAGAAAAAAGGACCATCGTCATGGAGAGGAAGCAGAAGAAGGCG
CAGAAGGAAGAGGCAGAGAAGCATCTGCGCTTACAGCAGGACCTGAAACTGTTAAAAACA
GAACATCTTCTGTGGCAACTCTACAGCATTGAAAAAGACATGGAAAAAATAGAAGCTGAA
CTTGAGGATGAAAGACATTCTCTTCAGCAAGCGCGGGAAGATAATCAATCCTCCGACAAT
GGACTTGCTGCAAAAAAGAAGGAGCAAAGTGCATTTCTCAAGAAGATTACTTTATGTGAG
AAGAGTATGGCCAAGAAAAAGATTGATATGGACAAGAAGCAACCCGAGCTTCTTAGATTG
AAAGAGCAAATATCTCGGCTCAAATCCAAAATCAAAAGCTGCAACAAAGAGATTGACAAA
AAGAAGGATGATAACAAGACACATTTGGAAGAGATGAAAAGGCTGCAGAGTGCTTTGGCT
GATGT

Homology of Contig U35_9080 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g44390.1	574	1e-126	protein\|RecF/RecN/SMC N terminal domain containing protein, expressed
Brachypodium v1_2	Bradi3g12830.2	1228	3e-123
Arabidopsis v10	AT3G54670.3	1239	3e-72	\| Symbols: TTN8 \| Structural maintenance of chromosomes (SMC) family protein \| chr3:20235818-20243701 FORWARD LENGTH=1239