- Probe CUST_30788_PI390587928
- Source Contig U35_9090
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30788_PI390587928 | Hv_44K_v2 | GTATAATACCGATCGTAGTACGATTTTCATCCGGAATAAAAACAACCGTCCGAGGTCAAA | 387 | GeneList: midnightblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.710 | 1.071 | 1.029 | 1.366 | 0.787 | 2.184 |
| Raw | 15.387 | 35.521 | 30.635 | 64.619 | 12.798 | 38.589 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_66726.2 | 801 | 7e-23 | 97 - 153 | 100 | 57 / 57 | minus | ABC18972 |
| MLOC | MLOC_66727.1 | 4388 | 7e-23 | 57 - 113 | 100 | 57 / 57 | minus | ABC18972 |
| MLOC | MLOC_66726.1 | 820 | 7e-23 | 101 - 157 | 100 | 57 / 57 | minus | ABC18972 |
| JLOC1 | JLOC1_44009.1 | 1791 | 4e-23 | 1636 - 1692 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC18972 | 461 | 3e-25 | 388 - 447 | 100 | 60 / 60 | plus | ABC18972 |
| Harvest35 | U35_9090 | 461 | 3e-25 | 388 - 447 | 100 | 60 / 60 | plus |
Contig Sequence (461 bp)
>U35_9090 461 Hv_44K_v2 CTGGTACAGATCGAATCCGAGCTGAGATGTCATCATCTGAACTGGATGGGCGCAGTCTCG CCAGAGCATCTTGGAACGCAGAAGAAGACCGGTCTGAAGCTTAACAAGAACTGTACTTGA TCAGCATTCAGCAGCATGATTATTAGTTGCAGAATCTGGCGCGGAGCCGTCCTGAGCAGA GTCTTGTTGCAGGAACTTTACCTGCAAGAAAGAAATTTGAAGGATGCATGCACTACTGAA AGAAGTTGGCATCTGCACGCCGAGGCAAGAATTTGACTGGACATTCAGATCGGTAACAAT TGTAGCATTAGCAATAGAGAGATGTGGTACACCTAAGGCTCCGCTTGGAATAGGTGTAAA CTTATACATCTGGATTTAATTACAAGTGTATAATACCGATCGTAGTACGATTTTCATCCG GAATAAAAACAACCGTCCGAGGTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_9090 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |