barSeed - Barley Seed Development Database

Probe CUST_30784_PI390587928

Source Contig U35_9094

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30784_PI390587928	Hv_44K_v2	TTTGGCTGTCACTTCATGAATGAAAACACGACGATCTATCTGTCGATGGACTGGAAAAAA	586	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74264.1	1206	3e-22	85 - 140	100	56 / 56	minus	ABC42051
JLOC1	JLOC1_49485.1	1204	1e-22	85 - 140	100	56 / 56	minus
Harvest35	U35_9094	657	3e-25	587 - 646	100	60 / 60	plus

Contig Sequence (657 bp)

>U35_9094 657 Hv_44K_v2
ATGAACGGCGCCGGGCTCATCATCCTGGAGCCCCACGGCGGGTTCATGGGGAGCGTCCCC
ACCGACGCGACGCCGTACCCTCACCGGAGCGGCGTGCTGTACAACGTCCAGTACATGGTG
TTCTGGCAGGGTGACGGGGGCACGGCGGCGAACACCTGGCTCGGCAACTTGTACGACTTC
ATGGGGCAGTACGTGAGCAAGAACCCGAGGCAGGCGTACGTCAACTACCGGGACCTGGAC
ATCGGCCAGAACGTGGTGGTGGACGACGCCACCACGTTCGACAGCGCCAAGGTTTGGGGT
GAGCAGTACTTCACGAGCAACTTCCAGAGGCTCGCGGCAGTGAAGGCGGCCGTGGATCCC
ACCGACTACTTCAGAAACGAGCAGAGCATCCCGCCATTGGTCCAAGGACGTAAGTGAGCA
AGGTTGTACTACTGTATTTGTATGCAAGCGATCCAACTAATTAATTGGATGCTTTGTAAT
GACTATTGGTTGTGAAAACGGAAGTAGGATGCACCAAGGCAATTTGTGCTTCTGTCAGTT
CATGCATGAGAGCAACGGAAGTAGGATGCGGCAACCAAAATTGTAATTTGGCTGTCACTT
CATGAATGAAAACACGACGATCTATCTGTCGATGGACTGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_9094 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35630.1	529	2e-61	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi3g35230.1	369	2e-61
Arabidopsis v10	None