barSeed - Barley Seed Development Database

Probe CUST_30777_PI390587928

Source Contig U35_14101

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30777_PI390587928	Hv_44K_v2	ACTTATGTACTGTACTCTTAAACTAAATATGGTGTTGCAATGACGAGGTCGCGTAAAAAA	1046	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.865	3.919	1.301	0.745	0.295	0.406
Raw	705.360	896.112	263.461	238.182	34.062	50.269

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_46952.1	1402	5e-22	1112 - 1166	100	55 / 55	plus
Harvest21	ABC00607	332	2e-22	256 - 310	100	55 / 55	plus
Harvest21	ABC00406	1363	2e-22	1018 - 1079	97	60 / 62	plus	ABC00406
Harvest35	U35_14101	1164	3e-25	1047 - 1106	100	60 / 60	plus

Contig Sequence (1164 bp)

>U35_14101 1164 Hv_44K_v2
TCGAGCACTGTTGGCCTGGACAGACACTCGATCCAACTCATTCCCCTACCCTGCTACCCA
GGCACCACCAACCCAGGCAGAGCTAGCGACCAGAGCCATGGCGCCCAGCGGAGACAACAC
CGTGGCCAACGTCCACAGCGGCATCGACAGCACCAACAAGACGCTGCTCAAGAGCGACGC
CCTCTACACCTACATCCTCGACACCACCGTGTTCCCCCGCGAGCACGAGTGCATGCGCGA
CCTGCGCCTCATCACCGACAAGCACCCCTGGGGTTACATGCAGTCGTCCTCGGACGAGGC
GCAGCTGCTGGGGATGCTGATCAAGATGGCAGGGGCCAAGAAGACGATCGAGGTGGGCGT
GTTCACGGGCTACTCGCTGCTGGCCACCGCGCTGGCGCTCCCCGAGGACGGCAAGATCGT
GGCCATCGACACCGACCGTGAGTGCTACGAGGTGGGCCGCCCCTTCATCGAGAAGGCCGG
CATGGCGCACAAGGTGGACTTCCGCGAGGGCACCGGCCTGGAGCGCCTGGAGGAGCTCCT
CGCCGAGGACGATGGCGCGGCCAGCTACGACTTCGCGTTCGTGGACGCCGACAAGCCCAA
CTACGTGCGCTACCACGAGCAGCTGCTGCGGCTGGTGCGCGTCGGCGGCACCATCATCTA
CGACAACACGCTCTGGGGCGGCACGGTGGCGCTGCCGGCGGGCACGCCCTTGTCCGACCT
CGACACCCGCTTCTCCGCCGCCCTCAGGGACCTCAACGCCAAGCTCGCCGCCGACCCGCG
CATCGAGGTCTGCCAGCTCGCCATCGCCGACGGCGTCACCATCTGCCGCCGCGTCGTCTA
GACGGGCGTCCGGTCAGGTCCGGCGTGAAGCATCGGGATCCGCCGTGCGTGGAGTCGATT
TCGTTCCTTACCAGCCGCTTCCCTTAATCAATTGTATTATTTTTCCCTGCCAGCGCTGGC
TAGCGTGAAGCATCTGATGGTTTCGAGTTTTCAATAATACTTTTTTGCTTTCGAAATTTG
ATGAGAGGAGAGGGAGGAGTGGTTCTACTTATGTACTGTACTCTTAAACTAAATATGGTG
TTGCAATGACGAGGTCGCGTAAAAAAAAAAAAAAAAAAGTCGTTGTCAAGTGTCTCATTG
CTATGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14101 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g38900.1	253	9e-127	protein\|caffeoyl-CoA O-methyltransferase, putative, expressed
Brachypodium v1_2	Bradi3g39420.1	245	1e-133
Arabidopsis v10	AT4G34050.1	259	5e-84	\| Symbols: CCoAOMT1 \| S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:16310844-16311973 FORWARD LENGTH=259