barSeed - Barley Seed Development Database

Probe CUST_30775_PI390587928

Source Contig U35_14103

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30775_PI390587928	Hv_44K_v2	TGCTTTGGATTTTGTGGTGCCGAAATCGATTTTAGACTGGAACGGAAATGGATTATTTGC	2880	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75180.2	4477	2e-24	2522 - 2581	100	60 / 60	plus	ABC00071 ABC00091 ABC00416 ABC00568 ABC24078
MLOC	MLOC_75180.1	3172	2e-24	2522 - 2581	100	60 / 60	plus	ABC00071 ABC00091 ABC00416 ABC00568
MLOC	MLOC_75180.3	4541	2e-24	2522 - 2581	100	60 / 60	plus	ABC00071 ABC00091 ABC00416 ABC00568 ABC24078
JLOC1	JLOC1_50142.4	2494	8e-25	2417 - 2476	100	60 / 60	plus
JLOC1	JLOC1_50142.3	2909	8e-25	2832 - 2891	100	60 / 60	plus
JLOC1	JLOC1_50142.2	3014	8e-25	2937 - 2996	100	60 / 60	plus
JLOC1	JLOC1_50142.1	2649	8e-25	2572 - 2631	100	60 / 60	plus
Harvest35	U35_14103	2968	3e-25	2881 - 2940	100	60 / 60	plus

Contig Sequence (2968 bp)

>U35_14103 2968 Hv_44K_v2
GAGTGAAGCGGCCGGCGACGATGCGCAAGTGGGCGCTCTCCTGCGCGCTCCTCCTCGTCC
TCCTCCTCACCACCCTCCCCGATCCAGCTAAGAAGCTCCAAGTCAATGCCGAGGAGAGCA
GCGACGAGGTTGGCGATTTTCCCAAGGTAGAGGAGAAGCTTGGGGCCGTGCCCCATGGCT
TGTCCACCGACTCCGAGGTTGTCCAGAGGGAGTCCGAGTCGATCTCGAGGAAGACCCTCA
GGAACTCGGCCGAGAAGTTTGAGTTCCAGGCCGAGGTGTCCAGGCTCATGGACATCATCA
TCAACTCACTCTACAGCAACAAGGACATCTTCCTGAGGGAGCTCATTTCCAATGCATCTG
ATGCTTTGGACAAGATTAGGTTCCTTGCCCTCACCGATAAGGAGGTTATGGGTGAAGGTG
ACACTGCTAAGCTTGAAATCCAGATTAAGTTGGATAAGGAGAACAAGATTCTCTCTATTC
GCGATAGGGGTGTTGGTATGACCAAGGAAGATCTCATTAAGAACCTTGGAACCATTGCCA
AGTCTGGAACTTCAGCTTTTGTGGAAAAAATGCAGACTGGAGGTGACCTCAATCTCATTG
GGCAGTTTGGTGTTGGTTTCTACTCAGTATACCTGGTTGCTGACTATGTTGAAGTGGTCA
GCAAGCACAACGATGACAAACAGTATGTATGGGAGTCCAAAGCTGATGGATCATTCGCTA
TTTCTGAGGATACATGGAATGAACCCCTGGGCCGTGGAACTGAGATCAAACTGCATCTCC
GCGATGAGGCTAAGGAGTACTTGGAAGAAGGAAAGCTGAAGGACTTGGTGAAGAAGTACT
CTGAGTTCATCAACTTCCCCATCTACTTGTGGGCAACCAAGGAGGTTGATGTTGAAGTGC
CAGCTGATGAGGAGGAATCAAACGAAGAGGAGGAATCAACCACAGAGACCACAGAGGAAG
AAGAGACAGAAGATGATGAAGAGAAGAAGCCTAAGACAAAGACTGTAAAGGAAACTACTA
CTGAATGGGAGCTTCTTAATGATATGAAGGCCGTGTGGCTTCGTAGCCCCAAGGAGGTTA
CCGAAGAGGAGTATGCAAAGTTTTACCACTCACTTGCTAAGGACTTTGGTGACGACAAGC
CTATGTCTTGGAGCCACTTCAGTGCTGAGGGAGATGTTGAGTTCAAAGCTTTGCTCTTTG
TTCCCCCGAAGGCTCCACATGATCTGTACGAGAGCTACTACAATGCTAACAAGTCAAACC
TCAAGCTGTATGTTAGAAGGGTTTTCATCTCTGATGAATTCGATGATCTTCTTCCAAAAT
ACCTCAGCTTTTTGATGGGTATTGTTGACTCAGACACATTGCCCCTCAATGTATCCCGAG
AAATGCTTCAACAACATAGCAGTCTGAAGACCATCAAGAAGAAACTGATCCGCAAGGCTC
TTGACATGATTAGGAAACTTGCTGAGGAGGATCCTGATGAGTACAGCAACAAAGAAAAGA
CAGATGATGAAAAGAGTGCAATGGAGGAGAAGAAGGGCCAGTATGCCAAGTTCTGGAACG
AGTTTGGCAAATCAGTCAAGCTGGGAATCATTGAAGATGCAACAAACAGGAACCGTCTTG
CAAAGCTTCTGAGATTCGAGAGTTCCAAGTCAGATGGCAAACTTGTCTCCCTTGATGAGT
ATATTTCAAGGATGAAATCAGGGCAGAAGGACATCTTCTACCTTACAGGAAGCAGCAAGG
AACAGCTAGAGAAATCTCCATTCCTTGAGCAGCTAACCAAGAAAAACTACGAGGTTATCT
ACTTCACCGACCCCGTGGATGAGTACCTGATGCAATACCTCATGGACTACGAGGACAAGA
AGTTCCAGAACGTGTCCAAGGAGGGCCTGAAGCTCGGCAAGGACTCGAAGCTCAAGGACC
TCAAGGAGTCGTTCAAGGAGCTGACCGACTGGTGGAAGAAGGCCCTGGACACGGAGGGCA
TTGACTCTGTGAAGATCAGCAACCGGCTGCACAACACCCCCTGTGTGGTGGTCACCTCCA
AGTATGGATGGAGTTCCAACATGGAGAAGATCATGCAGGCACAGACCCTGTCGGACGCGA
GCAAGCAGGCGTACATGCGCGGCAAGAGGGTCCTGGAGATCAACCCCCGGCACCCCATCA
TCAAGGAGCTCCGCGACAAGGTCGCCCAGGACAGCGACAGCGAGGGCCTGAAGCAGACGG
CGAGGCTGGTGTACCAGACGGCGCTGATGGAGAGCGGGTTCAACCTGCCGGACCCCAAGG
ACTTTGCGTCGAGCATCTACCGGTCGGTGCAGAAGAGCCTGGACCTGAGCCCCGACGCTG
CCGTGGAGGAGGAAGAGGAGGTGGAGGAGCCAGAGGTGGAGGAGAAGGAGTCGGCCAAGC
AGGAGGCGGAGGAGCCGGAACACGAGCAGTACGACAAGGACGAGCTGTAGTTGCTCATAT
CGCCCATTTAGCTTTCATTTCATTAGAAAGAAATGTTGGACTGGAAATGTGATGGTTTTG
AGGGACGTCCATTTTTACCGCGCGGAAGACGATTAATCATCGATCGTGATACGGGGGGTT
TTGTCCGTGTAATGTACTACTGTACCTAGTTTCTTGTTTAATGACGATACCCTAGCTAGT
TGGAATTAGCGTGCAAAAAAAAATTCCTCAGACAAAAAAAAAAAAATGTTTTGTATACTT
TTATATGCTGTTTTGGTTTGTTGGCGGTGGTACGAGCAGAGTTACAGGAATCAATAATGG
GGTTACGAAGGTAGTCTGCTCGTACTGAATTTTTATATTTTATTAATGCAGGGTTATCAG
GCTAGTTCCAAGGTTGAGTCCGTATGGTTAGCTGCTATTATCTGGAAACAGGAGCGAGTT
TGCTTTGGATTTTGTGGTGCCGAAATCGATTTTAGACTGGAACGGAAATGGATTATTTGC
CCCATTTTATAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14103 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g50300.1	813	protein\|heat shock protein, putative, expressed
Brachypodium v1_2	Bradi1g30130.1	808
Arabidopsis v10	AT4G24190.1	823	\| Symbols: SHD, HSP90.7, AtHsp90.7, AtHsp90-7 \| Chaperone protein htpG family protein \| chr4:12551902-12555851 REVERSE LENGTH=823