barSeed - Barley Seed Development Database

Probe CUST_30774_PI390587928

Source Contig U35_14104

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30774_PI390587928	Hv_44K_v2	GATAAGGTGAGTGTATCCCTGTGTATATGAACGTGTGCATCTGTACTCTGTTCTGTGTTT	891	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.162	4.056	1.182	0.848	0.184	0.242
Raw	191.300	304.768	71.960	82.234	4.936	8.794

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39303.1	572	7e-23	438 - 497	98	59 / 60	plus	ABC01307 ABC01317
JLOC1	JLOC1_25619.1	573	4e-23	438 - 497	98	59 / 60	plus
Harvest21	ABC01307	975	3e-25	892 - 951	100	60 / 60	plus	ABC01307
Harvest35	U35_14104	975	3e-25	892 - 951	100	60 / 60	plus

Contig Sequence (975 bp)

>U35_14104 975 Hv_44K_v2
CAACACTATCCGCTCGTGTCTCGTCGAGCTATCTGTCCACGGAGTAGTACCTTCCCGAGC
TAGCTCGCAGCTCCGCCGCAATGGCCACCGTGGTGAGCAGCCTCCGCTTGCCCTTCTCCG
TCTGCGCCGCCGCCCCCTCGGCGCCCATGGCATCCCGCGTCGCGCTCCCGCTGTCGTCGA
CGGCTGCCAGGGGCATGAGGCTCCGCGCGCAGGCGACGTACAAGGTGAAGCTGATCACGC
CGGAGGGCGAGGTGGACCTCGAGGTCCCCGACGACGTCTACATCCTCGACCACGCCGAGG
AGGAAGGGATCGACCTGCCCTACTCCTGCCGCGCCGGCTCCTGCTCCTCCTGCGCCGGGA
AGGTGGTCTCCGGCCAGCTGGACCAGTCCGACCAGAGCTTCCTCGACGACGACCAGATCG
AGGCGGGGTGGGTGCTCACCTGCGCCGCGTACCCCACCTCGGACCTCGTCATCGAGACAC
ACAAGGAGGAGGAGCTCACCGCTTGAATTCACTGATTTTGTGTATTTCCATCCGTTTCCG
GCGTGCGCGTGTATATGCACGATGCATGAACTGTATCAGGATATTGAGGAGTTACAGAGT
AATTAGTACTTGCTGCTGTGGTCGGAATTTGATTGCTTATTAATGCCTGTGTTAATTTTC
TCAAGTCGAACCAAAAGAGTGTGATTGTTGGATGGTAGGAGGGATTGTGGTATCTTCAGT
CCATCACAGTTCAAGTCTGTTTCATTTATTTCCGAATTTCCGACAATGCGTATTTAGTGA
AAGAAGACATTTTCTCCTATAATGTGATGCCTACGGCGACTTTGTAAATCACAAGATGAT
ATGTCAGCTCAGTGTGTGAGAAGTACTCATAAAATAGGGTGTGTGTACGTTGATAAGGTG
AGTGTATCCCTGTGTATATGAACGTGTGCATCTGTACTCTGTTCTGTGTTTACCNAANAA
AAAAAAAAAAAAAAA

Homology of Contig U35_14104 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None