barSeed - Barley Seed Development Database

Probe CUST_30770_PI390587928

Source Contig U35_14108

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30770_PI390587928	Hv_44K_v2	AATACTAGCGTGTACTTAATTCAACGTACTGAAATGAATCCTGATGGCTGAGGTGTCAAA	486	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.634	4.088	1.271	0.813	0.277	0.370
Raw	1002.083	1467.380	376.697	401.688	44.029	67.108

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6135.1	1496	7e-23	376 - 432	100	57 / 57	minus	ABC01307 ABC01314
JLOC1	JLOC1_3979.1	1380	4e-23	392 - 448	100	57 / 57	minus
Harvest21	ABC01314	562	1e-23	487 - 543	100	57 / 57	plus	ABC01314
Harvest21	ABC01312	1040	1e-23	936 - 992	100	57 / 57	plus
Harvest35	U35_14108	560	3e-25	487 - 546	100	60 / 60	plus
Harvest35	U35_14111	804	1e-23	690 - 746	100	57 / 57	plus

Contig Sequence (560 bp)

>U35_14108 560 Hv_44K_v2
CTCAGCCACACCTAGAGCATCTTAGCTCCAGCTAGCCACCAATGGCCGCCGCACTGAGCC
TCCGCGCGCCCTTCTCCGTGCGCGCTGTGGCGCCACCGGCGCCCCGCGTGGCCCTTGCGC
CCGCGGCCCTCAGCCTCGCCGCCGGCAAGTTGGTGTCCGGCGAGATCGACCAGTCCGACC
AGAGCTTCCTCGACGACGACCAGATGGAGGCAGGGTGGGTGCTCACCTGCCACGCCTACC
CCAAGTCCGACATCGTCATCGAGACCCACAAGGAGGAGGAGCTCACCGCATAAGCTGCTT
ACCCTGCCTCTCTTTGCAACAAGATCGAGCTGATATCATATTATCTCCCATCATGCATGC
ATGCATGGATATCGCCAGATACACCGATTTGTTTGTGCTCGAATGAATTGCTCGATGCAT
GGTTTGCTCCAGTAATAATGTCTTCGAATTACTACCTTTTTGTACCGTAAGATATACTAC
TGTCGTAATACTAGCGTGTACTTAATTCAACGTACTGAAATGAATCCTGATGGCTGAGGT
GTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14108 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None