barSeed - Barley Seed Development Database

Probe CUST_3076_PI390587928

Source Contig U35_11619

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3076_PI390587928	Hv_44K_v2	CAATATAGGTTTAATGTGACAGATATGCTCGAGAGGAGCCGAAACGATCCTATCGTGTTC	97	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374587	1764	2e-24	1261 - 1320	100	60 / 60	minus	ABC16071 ABC24936
MLOC	MLOC_56313.2	8146	2e-24	1957 - 2016	100	60 / 60	minus	ABC08567 ABC08568 ABC16071 ABC24936
MLOC	MLOC_56313.3	5068	2e-24	1957 - 2016	100	60 / 60	minus	ABC08567 ABC08568 ABC16071 ABC24936
MLOC	MLOC_56313.1	3964	2e-24	1957 - 2016	100	60 / 60	minus	ABC16071 ABC24936
JLOC1	JLOC1_36411.10	3107	8e-25	1236 - 1295	100	60 / 60	minus
JLOC1	JLOC1_36411.7	4039	8e-25	1267 - 1326	100	60 / 60	minus
JLOC1	JLOC1_36411.5	4427	8e-25	2375 - 2434	100	60 / 60	minus
JLOC1	JLOC1_36411.4	4791	8e-25	2375 - 2434	100	60 / 60	minus
JLOC1	JLOC1_36411.3	5089	8e-25	2375 - 2434	100	60 / 60	minus
JLOC1	JLOC1_36411.2	6843	8e-25	2375 - 2434	100	60 / 60	minus
JLOC1	JLOC1_36411.1	7505	8e-25	2375 - 2434	100	60 / 60	minus
Harvest21	ABC24936	616	3e-25	460 - 519	100	60 / 60	plus	ABC24936
Harvest35	U35_11619	616	3e-25	98 - 157	100	60 / 60	minus

Contig Sequence (616 bp)

>U35_11619 616 Hv_44K_v2
GGCTTGCCGGACCGCTCATATACCCTTGAACCATTCATGCGACCCGACACTGCAGCGACG
AGCTTGCACACCCGTTACAATCGATGGAGTCGCCGGTGAACACGATAGGATCGTTTCGGC
TCCTCTCGAGCATATCTGTCACATTAAACCTATATTGAACCTAAATGTATTTGGGCATGT
AGAGGTGACATTATTTGCACAAGACATGTTGTTCTCTAGCTAGTGTGACATCTCAACTAG
AAATGGTGACGGCTACCCACTTAGGGAGTTGGCAGCTTCGGCGAGGTTGCCATCGCCAGT
GCTGGAAGGACGAGTCGTTCCAGTCCTTGCGCATGCAGATTGTTCGTCATCCTTTCCCTC
CTTGTCATCAGGCGATCCGTGCCAATGCATAGTCAGAGTGTGACTCGATCCATGGCAATG
GAAGTTGTTTCATCGATTCCATCTTCTTAAGAAAGGTCAGGCAAGGAGTCGGCAGGAAAG
AAGGCATTCCATTGGATTGAGTTCTGAAGTCCGTATATAAGCCTAACCTAACTGAAAGGA
AAGGCTATATGCACGGCAATGATGCAAAGGTCGGGCATTTCAACCTCCTGCTTCAAAGCA
AAAAAAAAAAAAAAAA

Homology of Contig U35_11619 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None