barSeed - Barley Seed Development Database

Probe CUST_30769_PI390587928

Source Contig U35_14109

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30769_PI390587928	Hv_44K_v2	GAATTCTTCAGTTGAGTTTCCTTATGCGATTCAATAAGAACACCACTGTTTAGTGCAAAA	1036	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.332	3.713	1.277	0.716	0.207	0.221
Raw	931.398	1707.359	491.325	466.922	43.517	52.010

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22808.3	948	7e-23	883 - 939	100	57 / 57	plus	ABC01315
MLOC	MLOC_22808.2	1343	3e-21	1268 - 1324	98	56 / 57	plus	ABC01315
JLOC1	JLOC1_15797.1	1298	2e-21	1136 - 1192	98	56 / 57	plus
Harvest21	ABC01319	1107	3e-25	1034 - 1093	100	60 / 60	plus
Harvest21	ABC01318	540	1e-23	27 - 83	100	57 / 57	minus
Harvest35	U35_14109	1180	3e-25	1037 - 1096	100	60 / 60	plus

Contig Sequence (1180 bp)

>U35_14109 1180 Hv_44K_v2
CCGGGCTGCAGGAATTCTCAGCGACAACATTTCATCTCTCATCCTCCCAGCTTGGTTTTC
CGGCCATTCTAGCCACCATGCCAGGCTCCATCGCCTTTGGTCGCTTCGATGACTCCTTCA
GCGTGGCCTCTCTCAAGGCCTACGTCGCCGAGTTCATCTCCACCCTCATCTTCGTCTTCG
CCGGCGTCGGCTCTGCCATTGCCTACACCAAGGTGAGCGGCGGCGCGCCCCTTGACCCAT
CCGGGCTGATTGCCGTGGCGATCTGCCACGGGTTCGGGCTGTTCGTCGCGGTTGCCATCG
GCGCCAACATCTCCGGCGGCCACGTGAACCCTGCCGTCACCTTCGGCCTCGCGCTCGGCG
GTCAGATCACCATCCTCACCGGCCTCTTCTACTGGGTTGCGCAGCTCCTCGGTGCCATCG
TCGGCGCCTTCCTCGTCCAGTTCTGCACCGGCGTGGCGACCCCTACACACGGGCTTTCCG
GCGTGGGCGCTTTTGAGGGCGTGGTGATGGAGATCATCGTCACCTTCGGGCTCGTCTACA
CCGTGTACGCCACCGCCGCCGACCCCAAGAAGGGATCCCTCGGCACCATCGCCCCCATCG
CCATCGGCTTCATCGTCGGGGCCAACATCCTCGTTGCCGGCCCCTTCTCCGGCGGTTCCA
TGAACCCTGCACGCTCATTCGGCCCCGCCGTTGCCAGCGGCGACTTCACCAACATCTGGA
TCTACTGGGCCGGCCCGCTCATCGGCGGTGGCCTCGCCGGCATCGTCTACCGGTACCTGT
ACATGTGCGACAACCACACCCCCGTCGCCAGCAACGACTACTAAGCCATCCATGTGAAGG
GTCGTTCGGTGTTTGGTTTCCATGATGCCTTCGGCAACATAAAAAAGTGCGTGCGTGGTG
GTCAGAATGTCTCGATGATGTGAAGAACGTCATGTTGTTTGGTTCAGATCGAAGCCCAGT
AAAGTTGTAGCACTTGGATGATGCATGCTTCTCTATCTGTAATATAATGTGATGTTGTGA
AGTTGTTGGGGTTTGAGAATTCTTCAGTTGAGTTTCCTTATGCGATTCAATAAGAACACC
ACTGTTTAGTGCAAAAAAAAAAAAAAAAAGTTGTGATCCAAAAAAAAAAAAAAAAATTTT
TTCTCGAATTTTCTCTGGTTANNAAAAAAAAAAAAAAAAA

Homology of Contig U35_14109 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g22960.1	249	1e-154	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi3g50690.1	250	6e-111
Arabidopsis v10	AT3G16240.1	250	9e-118	\| Symbols: DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1 \| delta tonoplast integral protein \| chr3:5505534-5506788 FORWARD LENGTH=250