barSeed - Barley Seed Development Database

Probe CUST_30767_PI390587928

Source Contig U35_14111

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30767_PI390587928	Hv_44K_v2	AATACTAGCGTGTACTTAATTCAACGTACTGAAATGAATCCTGATGGCTGAGGTGTCTCT	689	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.290	4.010	1.209	0.799	0.249	0.350
Raw	994.342	1533.931	384.086	428.568	42.756	67.716

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6135.1	1496	2e-24	373 - 432	100	60 / 60	minus	ABC01307 ABC01314
JLOC1	JLOC1_3979.1	1380	8e-25	389 - 448	100	60 / 60	minus
Harvest21	ABC01312	1040	3e-25	936 - 995	100	60 / 60	plus
Harvest21	ABC01314	562	1e-24	487 - 545	100	59 / 59	plus	ABC01314
Harvest35	U35_14111	804	3e-25	690 - 749	100	60 / 60	plus
Harvest35	U35_14108	560	1e-23	487 - 543	100	57 / 57	plus

Contig Sequence (804 bp)

>U35_14111 804 Hv_44K_v2
CTAGCTCCACCTCTCATCCGCTCCTCAGCCACACCTAGAGCATCTTAGCTCCAGCTAGCC
ACCAATGGCCGCCGCACTGAGCCTCCGCGCGCCCTTCTCCGTGCGCGCTGTGGCGCCACC
GGCGCCCCGCGTGGCCCTTGCGCCCGCGGCCCTCAGCCTCGCCGCCGCCAAGCAGGTGCG
GGGAGCCAGGCTCCGCGCGCAGGCGACGTACAAGGTGAAGCTGGTGACGCCCGAGGGCGA
GGTGGAGCTGGAGGTCCCCGACGACGTCTACATCCTGGACCAGGCCGAGGAGGAGGGCAT
CGACCTGCCCTACTCCTGCCGCGCCGGCTCCTGCTCCTCCTGCGCCGGCAAGTTGGTGTC
CGGCGAGATCGACCAGTCCGACCAGAGCTTCCTCGACGACGACCAGATGGAGGCAGGGTG
GGTGCTCACCTGCCACGCCTACCCCAAGTCCGACATCGTCATCGAGACCCACAAGGAGGA
GGAGCTCACCGCATAAGCTGCTTACCCTGCCTCTCTTTGCAACAAGATCGAGCTGATATC
ATATTATCTCCCATCATGCATGCATGCATGGATATCGCCAGATACACCGATTTGTTTGTG
CTCGAATGAATTGCTCGATGCATGGTTTGCTCCAGTAATAATGTCTTCGAATTACTACCT
TTTTGTACCGTAAGATATACTACTGTCGTAATACTAGCGTGTACTTAATTCAACGTACTG
AAATGAATCCTGATGGCTGAGGTGTCTCTCTGATTAAAAAAAAAAAAAAAAATCTTCTTT
TTTACTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14111 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None