barSeed - Barley Seed Development Database

Probe CUST_30764_PI390587928

Source Contig U35_14114

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30764_PI390587928	Hv_44K_v2	TATTCCATGGTCAAGATTAATGTTTGTACAAAATCTGCTGTCTGTCCTAGCAATTTGATG	1052	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58872.1	1567	3e-22	16 - 74	98	59 / 60	minus	ABC01309 ABC42700
MLOC	MLOC_58871.1	508	3e-22	124 - 182	98	59 / 60	minus	ABC01309 ABC42700
JLOC1	JLOC1_38273.1	1556	1e-22	1360 - 1418	98	59 / 60	plus
Harvest21	ABC01309	781	2e-21	629 - 687	97	58 / 60	plus	ABC01309
Harvest35	U35_14114	1222	3e-25	1053 - 1112	100	60 / 60	plus
Harvest35	U35_14106	768	2e-21	677 - 735	97	58 / 60	plus

Contig Sequence (1222 bp)

>U35_14114 1222 Hv_44K_v2
ACCACACAATTCAACACAATTCAACACTAGCAGCTACACAGCACACGAGCCGATCCATCC
ATCCAAGGAAAAAAGAGTGCCCGTCGAAAATGCCGGTGAGCAGGATCGCCATCGGCGCCC
CGGGGGAGCTGTCCCACCCGGACACCTTCCGCGCCGGCGTCGCCGAGTTCATATCCATGC
TCATCTTCGTCTTCGCCGGCTCCGGCTCCGGCATGGCCTTCGGCAAGCTGACTGACGGCG
GCGCGGCGACGCCGGCCGGGCTGATCTCCGCGGCCCTGGCGCACGCGTTCGCGCTTTTCG
TGGCCGTCTCCGTGGGCGCCAACATCTCCGGCGGCCACGTGAACCCGGCCGTCACATTCG
GCGCCTTCGTGGGCGGCAACATCAGCCTCCTCAAGGCCGTCGTGTACTGGGTGGCGCAGC
TCCTCGGCTCCGTCGTTGCCTGCCTCCTCCTCAAGATCGCCACTGGCGGCGAGGCCGTGG
GCGCCTTCTCGCTCTCCGCCGGCGTCGGCGTCTGGAACGCGGTGGTGTTCGAGATCGTCA
TGACCTTCGGGCTCGTGTACACAGTGTACGCCACGGCTGTGGACCCCAAGCGCGGCGACC
TCGGGGTAATCGCGCCCATCGCCATCGGCTTCATCGTCGGCGCCAACATCCTGGCCGGCG
GAGCCTTTGACGGCGCGTCCATGAACCCCGCCGTCTCCTTCGGCCCCGCCGTGGTCAGCG
GCGTCTGGGAGAACCACTGGGTGTACTGGCTCGGCCCCTTCGCCGGCGCCGCCATCGCCG
CCCTCGTCTACGACATCTGCTTCATCGGCCAGCGCCCGCACGAGCAGCTCCCCACCGCCG
AGTACTGAAGACCTCAATCTGAATCTCTTCTGATCATCCATGCGTCATCGCCATGAGAGA
TTGAGAAATCAAGCAAGTGTCATCGTGTCATCAGTAAGCCAGTTTAGTTTCATTGTCACT
CTCTTGTCTTTGAGAAATTCAGGGTAAACTGTGTGTGAGTCAGTCAGGAATAATCTCTTG
TCTTGGTGTACGTCCTCAGTTATGAATGCTTCTATTCCATGGTCAAGATTAATGTTTGTA
CAAAATCTGCTGTCTGTCCTAGCAATTTGATGTCTTGCCAATCTTGTGTAAAAAAAAAAA
AAAAATGCTCTGGCTTTTGTCCTGTCACGACATAATATCTATGACAAGCATTCTTGAAAA
AAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g74450.1	253	2e-153	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi2g62520.1	253	3e-156
Arabidopsis v10	AT4G01470.1	252	2e-129	\| Symbols: GAMMA-TIP3, TIP1;3, ATTIP1.3 \| tonoplast intrinsic protein 1;3 \| chr4:625092-625850 REVERSE LENGTH=252