barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_30760_PI390587928Hv_44K_v2CTGGGGCACATGTGGGCATTTTGGGTGTATTTAGTTCTTCTCCAAGCTAATCGTACCTTT653GeneList: green
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0971.2831.1310.9780.4760.440
Raw 1334.5302427.0751906.7272556.517439.267441.664



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_56270.117642e-2431 - 9010060 / 60minus ABC01203 ABC01210 ABC04092
MLOCAK37024417403e-211646 - 17059758 / 60plus ABC01203 ABC01210 ABC04092
JLOC1JLOC1_36381.318818e-251689 - 174810060 / 60plus
JLOC1JLOC1_36381.218918e-251699 - 175810060 / 60plus
JLOC1JLOC1_36381.17808e-25588 - 64710060 / 60plus
Harvest21ABC012037683e-2556 - 11510060 / 60minusABC01203
Harvest35U35_141187683e-25654 - 71310060 / 60plus



Contig Sequence (768 bp)

>U35_14118 768 Hv_44K_v2
CCCTCCTCGGTATCCTTCTTCTCCTCCTCGTCTTCATCGTCAGAAATTTCCTTCTCGGTG
GTCTTCTCAGTCCACAGGGAGATGGGGTAGCTGATAAACTCGGAGTGCTTCTTAACTAGA
TCCTTGATGCGGCGCTCCTCAAGGTATTCCATCTGGTCGTCCTTGAGGTAGAGGACCATC
TTGGTCAACTTCCTGGCACCCATAAATCCAATCGAAAAACTAGAAGGCGCTATGACAGCA
GGGAGGGACATCAGATTTTATAACACAGAGATGCATAAGGCAGCGTTTGTTCTTCCAACC
TTTGCAAAGAGAGAGCTAGAAACATACGGTGGCTCCACTAGAAGGGCACAGCAAGAGGAA
ACATCAGCAGAACCAGCGAAGGTTGCCATCGTGCCACACAGTGAAATTCTTACCGCTTAG
ACGAGGACTCGGGGACTCGTTCAATCAGGGAACGGTTCCTCTCCACTACAGTAGTATCCA
TGCTGGACATCAAGTAGTACTTACGAGTATAGTAGCAACATAATTGGCATGGGATACGGC
CGTACGCTTTGTGCGATTGATGTTATGGTATGATAAGATTTGTTGGACTGATTCCTGGTA
ATAGATAAACCAGAGAAAATTGTGTGATTACCGTAGCTTGCTTCTTATTGGCGCTGGGGC
ACATGTGGGCATTTTGGGTGTATTTAGTTCTTCTCCAAGCTAATCGTACCTTTTTTTGGG
TAATGCATAAGAATTTGGCTCCTGTTTGAATAAAAAAAAAAAAAAAAA



Homology of Contig U35_14118 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None