barSeed - Barley Seed Development Database

Probe CUST_30759_PI390587928

Source Contig U35_14119

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30759_PI390587928	Hv_44K_v2	ACATGGGAAATGTACTTGTTGAAAATCTGCACTTTGGTGGGAATGGAGTTCCTCAGAGCG	1322	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364339	3295	2e-24	2689 - 2748	100	60 / 60	plus	ABC06648
MLOC	MLOC_32341.3	3970	2e-24	546 - 605	100	60 / 60	minus	ABC06648
MLOC	MLOC_32341.1	3351	2e-24	759 - 818	100	60 / 60	minus	ABC06648
MLOC	MLOC_32341.2	3255	2e-24	663 - 722	100	60 / 60	minus	ABC06648
JLOC1	JLOC1_21116.6	3195	8e-25	2450 - 2509	100	60 / 60	plus
JLOC1	JLOC1_21116.5	3993	8e-25	3354 - 3413	100	60 / 60	plus
JLOC1	JLOC1_21116.4	3162	8e-25	2523 - 2582	100	60 / 60	plus
JLOC1	JLOC1_21116.3	2829	8e-25	1988 - 2047	100	60 / 60	plus
JLOC1	JLOC1_21116.2	2954	8e-25	2554 - 2613	100	60 / 60	plus
JLOC1	JLOC1_21116.1	3731	8e-25	3331 - 3390	100	60 / 60	plus
Harvest21	ABC06647	1916	3e-25	1323 - 1382	100	60 / 60	plus
Harvest35	U35_14119	1933	3e-25	1323 - 1382	100	60 / 60	plus

Contig Sequence (1933 bp)

>U35_14119 1933 Hv_44K_v2
GGCTGCAGGTGTGAATTGGGCTTTACTGGTCGCACGAGTCTGCCAGCTCTATCCTAATGC
CGTGCCAAGTATGCTGGTCTCGAGATTTTTCAGGGTTTTTACGCAGTGGCGCTGGCCAAC
TCCAGTGATGCTTTGTGCCATTGAGGAGGAGGAACTTGGCTTTCCTGTGTGGGATCCCCG
CAAAAATCCTCGTGACAGAACTCATCATATGCCCATTATCACCCCAGCATATCCTTGCAT
GAACTCCAGCTATAATGTTTCGACGAGCACACTGAGGGTTATGATAGAACAATTCCAGTT
TGGCAATAAAATATGCCAGGAAATTGAGATGAATAAGGCTAGTTGGTCTGCCCTTTTTGA
GCCTTTCAATTTTTTTGAGGCGTATAAAAATTATTTGCAAGTTGACATCATCGCTGAGGA
TGATGAAGATCTCAGACTTTGGAAGGGATGGGTGGAGTCTCGATTGAGGCAACTGACTTT
AAAGATTGAACGGGACACCTATGGGAAATTGCAATGCCATCCATACCCATATGAGTATGC
GGATCCTTCTAGACAGTGTGCTCATTGTGCTTTCTTCATGGGCTTATCAAGGAAAGAAGG
TGTGAAAATACAAGAAGGTCAGCAGTTTGATATTCGTGGAACAGTTGATGAGTTCAGGCA
TGAGATCAACATGTATATGTTCTGGAAACCTGGGATGGAGTTGGCGGTTTCTCATGTCCG
TAGGAAAGAGATTCCAGCTTATGTTTTTCCAGAAGGATACAAGAGACCTCGTCCTCAAAG
GCATGTGAACCATCAGCACCAGTCTGATAAAAATGACCCTGGAAATGGATCTCCAGACAG
CCAGCTGAAGAGAAAGCATGATTCTACTGGGATTGATGATACTGAACCTTGCCAATCTGT
TAAGAGGGCTTCAATCAGCCCAGGTCACCCAAAAACTTCGTCACCTCGGTCAGGCAATGT
TAGTGATGAGCCCATAAGCAACAGCCAACAGAAGGTTACTTCTAATGCAAGTGGTGGGAG
TCAGGATTCACCTGGCAGTGGAAATCAAGATCAAACAAAGTGCTCAGGTTCATCACATGC
ATCTGAGAAAAGCTTGGATTCAGTCGCATCAGGCTCCAAGTGTGTGAAAATTGAAGCTGT
TTGTTCCGGTGACGTGACTAGCAAGCATGTTGATTGTATTTCACCTGTCAAGGACAGCAT
TGCTCCAACCGTAGCAGTGAGTACAACTTTAAAGCGTGTTGCCGAGAAGGTCGTTTTGGA
GCTTGTTGGAAGTGAAAGCATGGGCGGTAATAATGCAGAGTTACTGCAGATTGCAGAAAC
GGACATGGGAAATGTACTTGTTGAAAATCTGCACTTTGGTGGGAATGGAGTTCCTCAGAG
CGGCCTTCCTGAAGAATTAGAGGTGTGAAGTCAGATGGATTCCAGAAGTTGTCATTGAGA
GTTAGTTTGACATCAACAGCATGAGGTTCCAGAGCCGGGTGGAATGGAGGGTCTGGTGTC
CCTTTGGTAAGTTGTTCAACTCACAAACTTTCCTTTTCGACACAGATCTGCAAACACTGG
GGACTTGAAGGCAGATGGTAAAATCATGTCTAGCAATGGCATGGCAAAAACAACAAACAA
GCGAAGTTTCTTTCATGGAAGGTCATAAGATCTTTGCCAACTCTAGTCTAGATCTGTGGC
AAGTTCATTTATGGAACCAGCTCGCTCCGCAGCTTAATTTGTTGATTCTGTCTGGAGTTG
CGGTGTAGCCCTAATGTAAGCTCCAGCAGGCTCCTTGGGATGACTTGTTGACTTCGCAAG
GATTCTTCTGTAGGTCTAGATTAGAGAGAGATATGTGATACTATCCTTCGTTGTTTCTCA
AGGCCCCTTTGTACCTTCCCAACCTTTGTAATATATAAGATTGCAAGTTGGTTTCTAAAA
AAAAAAAAAAAAA

Homology of Contig U35_14119 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g36360.4	653	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi1g37940.5	724	0.0
Arabidopsis v10	AT4G32850.8	765	2e-149	\| Symbols: nPAP \| nuclear poly(a) polymerase \| chr4:15850134-15854443 FORWARD LENGTH=765