barSeed - Barley Seed Development Database

Probe CUST_30757_PI390587928

Source Contig U35_14121

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30757_PI390587928	Hv_44K_v2	AACATCGGCGACATCGTCATCCCCAGAAATATCTACGGCCCTTGAGCGGAGCCGACCGGG	384	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20487.4	728	2e-24	411 - 470	100	60 / 60	plus	ABC01208 ABC39390 ABC40179 ABC43415
MLOC	MLOC_20487.3	1495	2e-24	1114 - 1173	100	60 / 60	plus	ABC01208 ABC39390 ABC40179 ABC43415
MLOC	MLOC_20487.1	1250	2e-24	1070 - 1129	100	60 / 60	plus	ABC01208 ABC39390 ABC40179 ABC43415
JLOC1	JLOC1_14200.1	1551	8e-25	838 - 897	100	60 / 60	plus
Harvest21	ABC40164	448	3e-25	384 - 443	100	60 / 60	plus
Harvest21	ABC01208	1088	3e-25	770 - 829	100	60 / 60	plus	ABC01208
Harvest35	U35_14128	1110	3e-25	780 - 839	100	60 / 60	plus
Harvest35	U35_14121	449	3e-25	385 - 444	100	60 / 60	plus

Contig Sequence (449 bp)

>U35_14121 449 Hv_44K_v2
TGTTGTTGTCTCACCGCGCAGCAAGGAGCAGCCAGCATCGAGAGAGCAGCAATGGCTATG
GCGTCGTCAAGCGGGCTCAGGAGCTGCAGCGCCGTGGGCGTGCCGAGCCTGCTGGCGCCT
TCGTCCCGGTCCGGCCGCTCCGGACTGCCGTTCTGCGCCTACGCCACCACCTCCGGCCGC
GTCACCATGTCCGCCGAGTGGTTCCCCGGCCAGCCCCGCCCCGCCCATCTGGACGGCTCC
TCGCCAGGGGACTTCGGGTTCGACCCCCTGGGCCTCGCCACCGTGCCGGAGAACTTCGAG
CGGTTCTGCGTGCAGCAGTCGGCGTACCCCGGCACCGGCCCGCTGGAGAACCTGGCCACG
CACCTCGCGGACCCGTGGCACAACAACATCGGCGACATCGTCATCCCCAGAAATATCTAC
GGCCCTTGAGCGGAGCCGACCGGGCTGAG

Homology of Contig U35_14121 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None