barSeed - Barley Seed Development Database

Probe CUST_30755_PI390587928

Source Contig U35_14123

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30755_PI390587928	Hv_44K_v2	TGAACTCAATCCTTGTACATTGAGTATCTATGTTGCTCCGTTTTCTTTATACTCTGCTGT	8	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.791	1.502	1.897	1.680	0.640	0.947
Raw	38.382	120.253	125.650	191.058	23.897	38.903

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32340.1	665	2e-24	91 - 150	100	60 / 60	plus	ABC06648
MLOC	MLOC_32341.3	3970	2e-24	420 - 479	100	60 / 60	minus	ABC06648
MLOC	MLOC_32341.1	3351	2e-24	633 - 692	100	60 / 60	minus	ABC06648
JLOC1	JLOC1_21116.3	2829	8e-25	2114 - 2173	100	60 / 60	plus
Harvest21	ABC06648	619	3e-25	552 - 611	100	60 / 60	minus	ABC06648
Harvest35	U35_14123	626	3e-25	9 - 68	100	60 / 60	plus

Contig Sequence (626 bp)

>U35_14123 626 Hv_44K_v2
GATGATCTTGAACTCAATCCTTGTACATTGAGTATCTATGTTGCTCCGTTTTCTTTATAC
TCTGCTGTTTGGTATTTGTTTGCTACTTTGCGCAGAGTTAGTTTGACATCAACAGCATGA
GGTTCCAGAGCCGGGTGGAATGGAGGGTCTGGTGTCCCTTTGGTAAGTTGTTCAACTCAC
AAACTTTCCTTTTCGACACAGATCTGCAAACACTGGGGACTTGAAGGCAGATGGTAAAAT
CATGTCTAGCAATGGCATGGCAAAAACAACAAACAAGCGAAGTTTCTTTCATGGAAGGTC
ATAAGATCTTTGCCAACTCTAGTCTAGATCTGTGGCAAGTTCATTTATGGAACCAGCTCG
CTCCGCAGCTTAATTTGTTGATTCTGTCTGGAGTTGCGGTGTAGCCCTAATGTAAGCTCC
AGCAGGCTCCTTGGGATGACTTGTTGACTTCGCAAGGATTCTTCTGTAGGTCTAGATTAG
AGAGAGATATGTGATACTATCCTTCGTTGTTTCTCAAGGCCCCTTTGTACCTTCCCAACC
TTTGTAATATATAAGATTGCAAGTTGGTTTCTTGTACTTTGGCAAAAAAAAAAAAAAAAA
AACCTTACCAACCTTTGTAATATATA

Homology of Contig U35_14123 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None