barSeed - Barley Seed Development Database

Probe CUST_30754_PI390587928

Source Contig U35_14124

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30754_PI390587928	Hv_44K_v2	ATTTTTGCTATGTGCCAAAGAGGGTCCACCAGTCAACTTCCTGGCACCCATAAATCCAAT	1132	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370244	1740	2e-24	1148 - 1207	100	60 / 60	plus	ABC01203 ABC01210 ABC04092
MLOC	MLOC_56270.2	1808	2e-24	419 - 478	100	60 / 60	minus	ABC01203 ABC01210 ABC04092
MLOC	MLOC_56270.1	1764	2e-24	532 - 591	100	60 / 60	minus	ABC01203 ABC01210 ABC04092
JLOC1	JLOC1_36381.3	1881	8e-25	1188 - 1247	100	60 / 60	plus
JLOC1	JLOC1_36381.2	1891	8e-25	1198 - 1257	100	60 / 60	plus
JLOC1	JLOC1_36381.1	780	8e-25	87 - 146	100	60 / 60	plus
Harvest21	ABC01210	1563	3e-25	1133 - 1192	100	60 / 60	plus	ABC01210
Harvest35	U35_14124	1585	3e-25	1133 - 1192	100	60 / 60	plus

Contig Sequence (1585 bp)

>U35_14124 1585 Hv_44K_v2
CGGCCCTCCACCGGCGCCGCCATCCCATCCCCTGCCCTCCCCCCGACTCCGGCTCACCCC
GCCGCTCAGCCGACCTCCGCCACCGCAGGTCGACCCCGACTGTGCCCGGCATCAAGCTTC
GCCGCTAGGGTTGTGCCGCCGCCCTTCTCCCGCGCTCCAACTTCGTCGTCGGCTTCCCCC
GCCCCCCACCCCGCAGCGCCTGTTCCGCGACCAGAGGCTGGGAACTTCAAAGAACAGGAT
CCATGGAGGGTGGAGACGTAAGAAATGGTTTGACTGGGACATCACAGACAAAGGGAAGTG
GGGTTGACAGCCCAGCAAAGCCGCTGCCTCCTTGCTGTGTCAAGGCGAGGGCTGCAGCAC
CTGAATCTGAGGCCAAGTGCCATGCCACTGTGGTGTCAGGATGGTTCACAGAAACCCACT
CCCGATGTGGTAAAGCGAGCAAACTGCAGTATTACAATAACCCAATGTGGCCAGGAGAGA
CCCATTCCTTGAAAGTGGAAAAGATCCTGTACCAGGGGAAGTCACCGTACCAAGAAGTCT
TGATTTTTGAGTCGTTAACCTATGGAAAAGTCCTTGTGCTTGATGGTATTGTGCAATTGA
CTGATAAGGATGAATGTGCCTACCAGGAAATGATTACTCATCTTCCACTATGTTCAATTC
CTTCTCCTAAGAAGGTTTTGGTTATTGGAGGTGGAGATGGTGGTGTACTTCGAGAGATAG
CCAGACATGGTTCAGTGGAGTCTATTGATATATGTGAAATTGATCAGCTAGTTATTGATG
TTTGTAAAGATTTCTTCCCAGACTTATCTGTTGGATTTAAAGATCCTCGTGTTCGACTTC
ATGTTGGTGACGCTGTGGAGTTCCTGAGAAATACTCCTGAAGGCACATATGATGCTATTA
TTGTTGATTCGTCAGATCCTATAGGGCCTGCTCAGGAACTTGTAGAGAAGCCATTTTTCG
AGACAATTGCTAGAGCTTTGAGACCTGGTGGTGTTCTTTGTAATCAAGCTGAGAGTATGT
GGTTGCATACACATCTGATTCAGGACATGCTTTCGATCTGCTGTGAGACTTTCAAGGGTT
CTGTCCACTATGCCTGGACAAGTGTCCCAACATATCCTAGTGGTGCAATTGGATTTTTGC
TATGTGCCAAAGAGGGTCCACCAGTCAACTTCCTGGCACCCATAAATCCAATCGAAAAAC
TAGAAGGCGCTATGACAGCAGGGAGGGACATCAGATTTTATAACACAGAGATGCATAAGG
CAGCGTTTGTTCTTCCAACCTTTGCAAAGAGAGAGCTAGAAACATACGGTGGCTCCACTA
GAAGGGCACAGCAAGAGGAAACATCAGCAGAACCAGCGAAGGTTGCCATCGTGCCACACA
GTGAAATTCTTACCGCTTAGACGAGGACTCGGGGACTCGTTCAATCAGGGAACGGTTCCT
CTCCACTACAGTAGTATCCATGCTGGACATCAAGTAGTACTTACGAGTATAGTAGCAACA
TAATTGGCATGGGATACGGCCGTACGCTTTGTGCGATTGATGTTATGGTATGATAAGATT
TGTTGGACTGATTCCTGGTAATAGA

Homology of Contig U35_14124 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g15550.2	398	0.0	protein\|spermidine synthase, putative, expressed
Brachypodium v1_2	Bradi3g09540.1	387	0.0
Arabidopsis v10	AT5G53120.6	386	2e-173	\| Symbols: SPDS3 \| spermidine synthase 3 \| chr5:21535429-21537653 FORWARD LENGTH=386