barSeed - Barley Seed Development Database

Probe CUST_3074_PI390587928

Source Contig U35_11625

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3074_PI390587928	Hv_44K_v2	CGTTGATAATGTGTTTAGAGTAGGAACTGAGAGACATTACAAAAGATGTAAAGTGAATCG	415	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.209	0.334	0.643	1.937	2.083	3.194
Raw	39.697	102.961	171.230	804.750	294.562	506.881

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_23277.2	916	2e-24	827 - 886	100	60 / 60	plus	ABC19665 ABC25809
MLOC	MLOC_23277.3	766	2e-24	523 - 582	100	60 / 60	plus	ABC19665 ABC25809
MLOC	MLOC_23277.1	574	2e-24	436 - 495	100	60 / 60	plus	ABC19665 ABC25809
JLOC1	JLOC1_16088.2	654	8e-25	428 - 487	100	60 / 60	plus
JLOC1	JLOC1_16088.1	755	8e-25	529 - 588	100	60 / 60	plus
Harvest21	ABC25809	520	3e-25	46 - 105	100	60 / 60	minus	ABC25809
Harvest21	ABC19665	596	4e-24	518 - 575	100	58 / 58	plus	ABC19665
Harvest35	U35_11625	520	3e-25	416 - 475	100	60 / 60	plus
Harvest35	U35_9061	596	4e-24	518 - 575	100	58 / 58	plus

Contig Sequence (520 bp)

>U35_11625 520 Hv_44K_v2
TTGGAGCAACCATGGGTGCCTCCGCTGCAGGGGGGTGACGCCCCGCCGCCGACCGTCCGC
TGCAGTAGCGGATCTTCCGCGGGGAGCCGCGTAGAGAGGAGAAGGGCGGAGGAGGGTTGT
GTGCCGAAGGCGCCGCCTCCATCGTGCGTGGAGGCGCATCCGTGTCGAGGTGCAGTTCCG
CGTCGATGTAATTTAAAGTCATGCCGGAGCCGGAGGACTGGAGTCGTGGCGCCGCCGATC
CATGCTCCAGTGAAACAACGAGGCCACGCTGTTGCCGCATTGGTAGGGGCGATCGCTTGT
CGGCCTTTGCCCGCTACAATCTGATTCCACTCCTGAAGGAGCACGGATGGGGGCGAGGCC
CTCGGTTGTCCCCGTCGGACGCAGCCTATACATTGCTCGATTGGAGAACAACAAGCGTTG
ATAATGTGTTTAGAGTAGGAACTGAGAGACATTACAAAAGATGTAAAGTGAATCGTTATC
TTTATTAATGATTGAGTACAAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_11625 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None