- Probe CUST_30743_PI390587928
- Source Contig U35_26106
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30743_PI390587928 | Hv_44K_v2 | ATAATAATCCTCCGTCAGTTGTTATGTTGCCTGTGATGTGTCGCAAAACTGTGGCTTGCC | 387 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.301 | 1.556 | 1.045 | 0.850 | 0.310 | 0.410 |
| Raw | 798.061 | 1482.597 | 883.869 | 1147.866 | 146.768 | 209.360 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_52096.1 | 3436 | 2e-24 | 40 - 99 | 100 | 60 / 60 | minus | ABC18874 |
| MLOC | MLOC_52096.5 | 3231 | 2e-24 | 2 - 61 | 100 | 60 / 60 | minus | ABC18874 |
| MLOC | MLOC_52096.4 | 3311 | 2e-24 | 39 - 98 | 100 | 60 / 60 | minus | ABC18874 |
| MLOC | MLOC_52096.3 | 3533 | 2e-24 | 39 - 98 | 100 | 60 / 60 | minus | ABC18874 |
| MLOC | MLOC_52096.2 | 3617 | 2e-24 | 40 - 99 | 100 | 60 / 60 | minus | ABC18874 |
| JLOC1 | JLOC1_33334.5 | 3551 | 8e-25 | 3450 - 3509 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33334.4 | 3617 | 8e-25 | 3516 - 3575 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33334.3 | 3263 | 8e-25 | 3162 - 3221 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33334.2 | 3384 | 8e-25 | 3283 - 3342 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_33334.1 | 1605 | 8e-25 | 1504 - 1563 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC29939 | 481 | 3e-25 | 388 - 447 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_26106 | 481 | 3e-25 | 388 - 447 | 100 | 60 / 60 | plus |
Contig Sequence (481 bp)
>U35_26106 481 Hv_44K_v2 GCGGTGGGCTACTGGCCTCGCTGCAAGCCACAACTACAGTGTGGAGTTCAGTGGTGTTGG CGGCTCGAGCGACGAACCTGGTTATGCTTCCCAGATTGCTGTTTTCAGAAGAATGGCGAC AGATCAAGGCGGATCTTCCCCGATCGAGAATGATTCGCATCAACCTTATGAAGTTCTCTG GGAATGGCCTAACGCATCTATACCTCTGACTGAGTTTGGGCGGAGAGTGCTTTTGCATGA TGAAGAAGAGTAGCCATGGCGCCTCCTTAAACAAAAGGAGGATGCCTGGCATCGGAGGCT TCGATCGCCCCCCAGCCGTCCAGGGCAGCTGCATTATGCTAAGGATCGTAGGACTCGCTC GTCTCTTCCACACACCATGCCGTGAGAATAATAATCCTCCGTCAGTTGTTATGTTGCCTG TGATGTGTCGCAAAACTGTGGCTTGCCGCTCAGCAGAGCTTTGCACTTGCTTATTTTTGA C
Homology of Contig U35_26106 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |