barSeed - Barley Seed Development Database

Probe CUST_30742_PI390587928

Source Contig U35_26107

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30742_PI390587928	Hv_44K_v2	CGCTATATGTTTGCAAACCTATGTACTAACTCAATATTACTACTTGTGGTCATGTTGATG	605	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.117	1.384	1.185	1.021	0.447	0.467
Raw	1185.011	2364.267	1724.653	2361.577	353.480	410.927

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370669	4073	2e-24	3801 - 3860	100	60 / 60	plus	ABC25030
MLOC	MLOC_4644.2	1325	2e-24	2 - 61	100	60 / 60	minus	ABC25030
MLOC	MLOC_4644.1	3641	2e-24	139 - 198	100	60 / 60	minus	ABC25030
JLOC1	JLOC1_2920.2	3618	8e-25	3359 - 3418	100	60 / 60	plus
JLOC1	JLOC1_2920.1	3633	8e-25	3374 - 3433	100	60 / 60	plus
Harvest21	ABC25030	705	3e-25	606 - 665	100	60 / 60	plus	ABC25030
Harvest35	U35_26107	705	3e-25	606 - 665	100	60 / 60	plus

Contig Sequence (705 bp)

>U35_26107 705 Hv_44K_v2
GCACGAGGGAAGAAAGAGACCTTGAAAGTTACATGGCTCAAAGTTAACAAGGATTTTGGG
TCTATATTCGGTACTCTTCTACCTGGTACAATGGCAAAGCTTGATCCTCCTGAAGGTGGT
ACCTTCTTGGATGGTCTTGAAGTTCGGGTGGCATTTGGAACAGTCTGGAAGCAATCTTTG
TCTGAACTTAGTGGAGGACAGCGATCCCTTCTTGCTCTTAGTCTTATTCTGGCGTTACTT
CTTTTTAAGCCTGCGCCGCTTTACATATTAGATGAGGTTGATGCTGCCCTTGATCTGAGC
CATACCCAAAACATTGGTAGAATGATAAAGGCGCATTTTCCACAGTCCCAGTTCATTGTT
GTGTCGCTAAAAGAGGGTATGTTCAACAACGCCAACGTGATATTCCGAACGAAATTTGTG
GATGGGGTGTCCACTGTGACACGAACAGTCCCTTCGAAACAGAAATGATAGACGTGCTTT
GTCTGAAGGGAAAACGACTGTGAAGAACTCTTTGGTCATGGCAGTCAACTAATCGGCTTC
CAATGTTCTGTGGTAGTTGGATTCACTACGAAGTCTCAAGCCCCTCACTTGTAGGCTATT
GGCATCGCTATATGTTTGCAAACCTATGTACTAACTCAATATTACTACTTGTGGTCATGT
TGATGTATATATATATTTTCTTCTGTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_26107 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67740.1	1176	2e-82	protein\|chromosome segregation protein, putative, expressed
Brachypodium v1_2	Bradi2g57967.1	1176	9e-83
Arabidopsis v10	AT5G62410.1	1175	1e-74	\| Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 \| structural maintenance of chromosomes 2 \| chr5:25056308-25062436 FORWARD LENGTH=1175