barSeed - Barley Seed Development Database

Probe CUST_30736_PI390587928

Source Contig U35_14133

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30736_PI390587928	Hv_44K_v2	AGGATCATTTGTATGTGCTATGTCATATATGCATGCATCACTAGTGCCTGTATGTGGATC	827	GeneList: cyan MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.139	10.386	0.796	0.497	0.993	0.884
Raw	56.236	75.650	7.667	5.551	3.083	3.203

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC02797	552	3e-25	448 - 507	100	60 / 60	plus
Harvest35	U35_14133	934	3e-25	828 - 887	100	60 / 60	plus

Contig Sequence (934 bp)

>U35_14133 934 Hv_44K_v2
ACCACCACTGCACGCACGCACGCACACTACCAACACAATTCACAAGTCCTCAGAGGACAA
CAAGAGCGGTATCATCCATCCATGGCGTCCTCTCGTGTTGTCTACCTCCTGGCCGGTCTA
CTCCTAGCCGCCCTCGCCGCCACCACAGACGCGGCCACCATCACCGTCGTCAACCGGTGC
TCCTACACGGTGTGGCCGGGCGCGCTCCCGGGTGGCGGTGTGCGTCTCGACCCAGGCCAG
TCGTGGGCGCTGAACATGCCCGCGGGTACCGCGGGCGCCAGGGTGTGGCCGCGCACCGGG
TGCACCTTCGACGGCAGCGGCCGCGGCCGGTGCATCACCGGCGACTGCAACGGTGTGCTG
GCATGCCGGGTGTCCGGCCAGCAGCCGACCACGCTGGCCGAGTACACCCTGGGCCAGGGC
GCGAACAAGGACTTCTTCGACCTGTCCGTCATCGACGGGTTCAACGTGCCGATGAGCTTC
GAGCCCGTGGGAGGGTGCCGTGCTGCGCGGTGCGCCACGGACATCACCAAGGATTGCCTC
AAGGAGCTGCAGGTGCCGGGAGGGTGCGCGAGCGCGTGCGGCAAGTTCGGCGGCGACACC
TACTGCTGCCGTGGCCAGTTTGAGCACAACTGCCCGCCGACCAACTACTCAATGTTCTTC
AAGGGCAAATGCCCCGACGCCTACAGCTACGCGAAGGACGACCAGACCAGCACCTTCACC
TGCCCTGCCGGAACCAACTACCAGATCGTCCTCTGCCCTTAGATCAATATCAGTCAATTA
CTTGGGTCAATAAGGAATAAGGACTACTCTTAGTCTGCTTATGATCGAGGATCATTTGTA
TGTGCTATGTCATATATGCATGCATCACTAGTGCCTGTATGTGGATCAATTATAAATAAA
TGGTTAAATAATATAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_14133 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g43490.1	259	7e-116	protein\|thaumatin, putative, expressed
Brachypodium v1_2	Bradi4g05440.1	228	1e-135
Arabidopsis v10	AT4G11650.1	244	5e-76	\| Symbols: ATOSM34, OSM34 \| osmotin 34 \| chr4:7025127-7026113 REVERSE LENGTH=244