- Probe CUST_30732_PI390587928
- Source Contig U35_14137
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30732_PI390587928 | Hv_44K_v2 | CTCGGGAAGAAGTCCAACCTGTCGGAGGTGACGCACAAGGTCTACTTCGACATCGAGATC | 216 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.223 | 0.366 | 1.048 | 1.835 | 0.980 | 1.680 |
| Raw | 1860.723 | 4869.527 | 11905.200 | 33081.600 | 6285.117 | 11511.277 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK358921 | 891 | 2e-24 | 186 - 245 | 100 | 60 / 60 | plus | ABC01382 |
| MLOC | AK252163.1 | 776 | 7e-23 | 162 - 218 | 100 | 57 / 57 | plus | ABC01382 |
| MLOC | MLOC_60375.1 | 980 | 7e-23 | 588 - 644 | 100 | 57 / 57 | minus | ABC01382 |
| JLOC1 | JLOC1_39362.1 | 929 | 8e-25 | 13 - 72 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39362.2 | 1245 | 4e-23 | 332 - 388 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC01372 | 649 | 3e-25 | 217 - 276 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC01382 | 920 | 1e-23 | 213 - 269 | 100 | 57 / 57 | plus | ABC01382 |
| Harvest35 | U35_14137 | 649 | 3e-25 | 217 - 276 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14154 | 937 | 1e-23 | 213 - 269 | 100 | 57 / 57 | plus |
Contig Sequence (649 bp)
>U35_14137 649 Hv_44K_v2 GGTTTATCTCGCCCGTGGACTCTCCCTCTCTCGGAGACTGCGTAGTGGAACGAGTAAACA GATCTGCTCTCTCCCTCTCTCTCGTGCGCGGCGGTACGATCCGAGATGGCGATGAGGGCG TGGAGGCGGAGCGCGGCGGCGAGGGCCCCGGCGCACCTGTGCCTGTGGCTGGCGCTCGTC GCCGCCACCCTGGTGCTCGCCCAGGTGCTCATCCACCTCGGGAAGAAGTCCAACCTGTCG GAGGTGACGCACAAGGTCTACTTCGACATCGAGATCGACGGCAAGCCCGCAGGTCGGGTT GTCATGGGACTTTTTGGCAAGGCTGTTCCTAAAACTGCAGAGAACTTCAGAGCACTCTGC ACAGGAGAGAAAGGTATGGGCAACAGTGGCAAACCTCTCCACTACAAGGGGAGTTCATTC CACAGAATTATCCCCAGCTTCATGATCCAAGGAGGTGACTTCACCCTTGGCGATGGAAGG GGTGGTGAATCAATCTACGGCACAAAGTTCGCCGATGAGAACTTCAAGCTCAAGCACACT GGACCAGGCTACCTTTCCATGGCCAATGCTGGGAGAGATACCAATGGATCCCAGTTTTTC ATCACCACTGTGACTACGAGCTGGTTGGATGGCAAGCACGTCGTGTTCG
Homology of Contig U35_14137 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os06g49480.1 | 226 | 1e-81 | protein|peptidyl-prolyl cis-trans isomerase, putative, expressed |
| Brachypodium v1_2 | Bradi1g34750.1 | 216 | 3e-83 | |
| Arabidopsis v10 | AT2G29960.1 | 201 | 6e-79 | | Symbols: CYP5, ATCYP5, CYP19-4 | cyclophilin 5 | chr2:12769183-12770528 REVERSE LENGTH=201 |