barSeed - Barley Seed Development Database

Probe CUST_3071_PI390587928

Source Contig U35_11628

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3071_PI390587928	Hv_44K_v2	CATGTATGTTGACTAATTCACACTGTCTAGGCATAGACCTAGCTATGATGTGTAAATCAT	590	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15615.1	1447	2e-24	323 - 382	100	60 / 60	minus	ABC13334 ABC24730
JLOC1	JLOC1_10722.1	1561	8e-25	1063 - 1122	100	60 / 60	plus
Harvest21	ABC24730	653	3e-25	4 - 63	100	60 / 60	minus	ABC24730
Harvest35	U35_11628	653	3e-25	591 - 650	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_11628 653 Hv_44K_v2
GTGAAGATCGACATTGATAACTCAAGAGTACCAGTTGATGTCTTTCTAGAACTAGTTGTG
AACATTTCAGAACTAAGTCATCCTAATATACTTGGGCTTGTGGGATATTGTGCGGAGTTT
GAGCAGCGGCTACTTGTCTACGAGCATTGTAGTAAGATGACCCTACATGATGAACTCCAT
TATGTTGATGAACCCAGCAACGCATTGTCATGGAACGCCCGTCTCCAAGTTGCCGTGGAA
GCAGCAAAGGCATTACAATATCTTCATGATGGCCGTCAACCACCGCTTGTACATCAAAAT
TTTGAACCATCTGTTGTTCTCCTTAATAGCACTTTGGCAGTTCAAATTTCTGAGTGTGGA
CTTGCATCGCTGTCTCAGGTAAACAATGAATTTTTTTTTTTGCAGAACTCTTGAGGTTGT
CGCGGAACTTCAGATGCTATGAATCACCATTATATGCTAGGGCTGATTTACAATAAAGAA
AAGAGGGATGTCACGTGTCAAATTACTTGGGGCATGGCGTGGGCTGGATTATATATATGC
AGTGTTCTGGAATTACACATTTTTGCTCTTTGTGAAGCCTAAATGCACTACATGTATGTT
GACTAATTCACACTGTCTAGGCATAGACCTAGCTATGATGTGTAAATCATGAC

Homology of Contig U35_11628 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37810.2	778	2e-65	protein\|STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed
Brachypodium v1_2	Bradi1g24567.1	782	2e-73
Arabidopsis v10	None