barSeed - Barley Seed Development Database

Probe CUST_30709_PI390587928

Source Contig U35_1041

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30709_PI390587928	Hv_44K_v2	GCAGCCTATATTTCCTATATAAAAGTTAGGGGCTCCTTTGATTTAAAGGAATTGTATAGG	1229	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.521	1.760	1.125	0.893	0.276	0.427
Raw	65.054	74.287	39.040	51.051	3.529	8.907

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_42585.1	1452	8e-25	1313 - 1372	100	60 / 60	plus
Harvest35	U35_1041	1324	3e-25	1230 - 1289	100	60 / 60	plus

Contig Sequence (1324 bp)

>U35_1041 1324 Hv_44K_v2
CCACACTCCCCACCTTCTTGCGCCACAAGCCGGAGCCGACGATCCGCCGTCCACGCGACC
TCCTCTGCCCGCCGGGATCGGAGACGACTGGATAGACGGTCTAGGGCTTGAAGCAACTTA
ACAATGAGTAGCATAGGAACTGGGTATGATCTGTCCGTCACCACTTTCTCCCCGGACGGA
CGTGTCTTCCAGGTCGAGTATGCTGGCAAGGCCGTCGACAACAGCGGGACGATCGTTGGG
ATCAAATGCAAAGATGGAATTGTCCTTGGTGTGGAGAAGCTGATAACCTCAAAGATGATA
CTTGCCGGGTCGAACCGGAGACTTCATTCCGTGCACCGGAACTCTGGCTTGGCTGTGGCT
GGGTTAGCAGCAGACGGTAGGCAGATAGTCTCAAGAGCAAAGTCAGAAGCAGCCAATTAT
GAAAAGGTATACGGAGAACCCATGCCTGTAAAGGAATTAGCTGATCGTGTTGCTAGCTAT
GTTCATCTGTGTACACTCTACTGGTGGCTCAGGCCTTTTGGCTGTGGAGTTATTCTTGGA
GGTTATGATAGGGATGGGCCACAGCTCTACATGATCGAACCTTCAGGCCTCTCCTATAAA
TATTTTGGTGCTGCTCTGGGTAAAGGTAGACAAGCTGCAAAAACGGAGATTGAGAAATTG
AAGCTTTCTGAGCTAACCTGCAGGGAAGGCATCGTTGAGGTTGCCAAGATAATTTATGGT
GTGCACGACGAAGCGAAAGACAAATCTTTTGAGCTGGAACTGAGCTGGGTATGTGAGGAA
TCTAACCGTCAGCACGAGAAGGTTCCGAGTGATCTTCTGGAGCAGGCCAAGGCAGCAGCG
CAGGCAGCGTTGGAAGAGATGGATGCTGACTAAGAAGAGACACTCGCCCCGTTTACTTTC
ACGCGTGGTGTAATAGAGATACAGGACCGGTTGACGAATATCATTTGAGTTCCAAAAACT
AGCTCAGGTTGTTGTTGCTTTCGATCCATCCCGGTCGAGGTTCTAGCGAATCGATCCGTA
TTAAGCTTGCTGTGTTGGTTGCACTTAATCTTCTATTAAATCCTGAGTGACCTGAAAAAT
CTGTTTTAAAAAAAAAAAAAAAATTTATCTGTCTCTTCGTTGCCATTACTCCAACCTTAG
GGCTCGTGGAATGCGAGAAAATAGACATAGAACATGTGTTTACCCGAAATTTTCAATTCA
ACCTGAGATTAATGATTCAATTATTCTTGGCAGCCTATATTTCCTATATAAAAGTTAGGG
GCTCCTTTGATTTAAAGGAATTGTATAGGATTTTTGGAGGATGGAAAAAAAGGGGAACTT
TTTC

Homology of Contig U35_1041 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41180.1	250	5e-156	protein\|peptidase, T1 family, putative, expressed
Brachypodium v1_2	Bradi2g21510.1	250	1e-160
Arabidopsis v10	AT2G27020.1	249	1e-142	\| Symbols: PAG1 \| 20S proteasome alpha subunit G1 \| chr2:11528515-11530858 REVERSE LENGTH=249