barSeed - Barley Seed Development Database

Probe CUST_3069_PI390587928

Source Contig U35_23600

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3069_PI390587928	Hv_44K_v2	TAGAAACGAAGGAAGTACGTAGTATACTACGATGCTAGCTATAGGTACATTCTAAGCTAC	718	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.440	0.745	0.629	2.284	2.570	4.483
Raw	4.438	13.353	10.894	65.432	24.009	46.347

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_36111.1	1357	8e-25	909 - 968	100	60 / 60	plus
Harvest21	ABC18815	778	3e-25	719 - 778	100	60 / 60	plus
Harvest35	U35_23600	778	3e-25	719 - 778	100	60 / 60	plus

Contig Sequence (778 bp)

>U35_23600 778 Hv_44K_v2
AAACTTTACAAACTTCTTCTTACGTGTAGGTGTAGCACGCAATGTCCACGGCGCCGCCGC
AACCGAACCAACAGCAGCAGCGCCACCGGAGGCTGCGGGTGCGGCGTGTGTTCGACCTCT
TCGACAACGACGGCGACGGGGTCATAACCGCCGGCGAGCTCTCGGGCGCGCTGGGACGCC
TGGGCCTCGCCCTGGGCGCGCAGGCGGACGTGCTCATCGCCGAGTACGTCGCACCCGGCA
TGCCCGGCCTGCGGTTCGCGGACTTCGAGGCGCTCCACGCCGAGCTCGCCGGCGGAGGCG
AGGAGGACGAGGAGGCGGAGATGAGGGAGGCTTTCGCCGTGTTCGACGAGAACGGCGACG
GGTACATCTCCGCGGCGGAGCTGCAGGCCGTGCTGGCGCGGATGGGGGTGCCGGAGGCGG
CGTGCATGGCGCGGGTGCGCGACATGATAGCCGCGCATGACCAGGACAGCGATGGCCGCG
TCGACTTCCACGAGTTCAAGGCTATGATGGCTGCCGGTATGTAACTGTAATGGCTTAGTT
ATAGGAATCTAATTTCTCGTTTCAAGTGATGTACTCACTCCATTCCTAAATATAAGTTTT
TTTTAGAGTTTTTATTAATGAACTACACATAGATGTATATAGACATAATTCTGAGTGTAG
ATTCATTCATTTTATTTCGTATGCAGTTCCTTTATAAAATCTTCAAAAGACTTATATTTA
GAAACGAAGGAAGTACGTAGTATACTACGATGCTAGCTATAGGTACATTCTAAGCTAC

Homology of Contig U35_23600 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None