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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_30698_PI390587928Hv_44K_v2GTGTTTTGTTTGCATGGGTAAAAATAAAAGTGGGAAATTGCAGATGCAGATTCATTGCTA994GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 4.2795.0701.2400.7790.3240.511
Raw 664.4421305.846262.804266.19838.48265.453



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_6898.15432e-24177 - 23610060 / 60minus ABC13422 ABC28963
JLOC1JLOC1_4533.15068e-25145 - 20410060 / 60minus
Harvest35U35_1970210703e-25995 - 105410060 / 60plus



Contig Sequence (1070 bp)

>U35_19702 1070 Hv_44K_v2
GTGCTAACAGCAGGCGTGAGTGCTCGTCATCCACCGAACCACGGCGGTGCGGCGGTTCAA
CGAGGAGCCACCGGAGGGCAAGGCGCCCTACTACACGCGGGACGCCGCGCGGCGCGTGCG
CTACAACTGCAACGCCGACCTCTTCCGGACGCAGCTGGGCAAGTGGCGCGACACCATCTA
CATGGAGGACGTGGACCGGAAGGGGGAGGAGGAGGACGACGAGGAGCTCCTCCCGCCGGC
GTTCAGGGGCGTGGCGCCGGGGTACACGGCGGAGATGCGGGCGCTGGGGCGCGCGCTCTT
CGAGCTGCTGTCAGAGGCCCTCGGGGTGCGGCGCGGGTACCTGGAGGAGGAGGCCGGCTG
CCTAGAGGCGCTCAGCGTCTCCGGCCACTACTACCCGGCGTGCCCGGAGCCGCACCTGAC
GCTGGGCGCCGTCCGGCACACCGACCCCGGCTTCCTCACCGTGCTGCTACAGGACGGCGT
CGGCGGCCTCCAGGTGCTCGTGGACGACGGCGGGGGCAAGCCCGCCGCGTGGGCCGCCGT
GCCGGCCGTGCCGGGGGCGCTGGTGGTGAACGTCGGCGACTTCCTGCAGCTGGTGTCCAA
CGACATGTTCAAGAGCGTCACGCACCGCGTGGTGTCCAACAGCGTGGGCCCAAGGGTGTC
GGTGGCGTGCTTCTTCAGGGCCAACGCCGCCAGGGTGTGCGCCCCGGCGGTCGCCGACGG
GGGCGGGCCGCCGCGGTACCGCAGCGTCACGGCGGCGGAGCTGCTCCGCTCGTCCATTGC
GCAGGCGCTCGGCGAACTGAGGATCTAGCTAGCGAGCAGATGCTTGTTGTTCGTGCATTT
GGAGCGGAGCATGGTGATGGTGTGTGCGTGCAAAATGCTTCTTCATGGATTTGGAGCTTT
GGACGAATCTGCTTAATCATCTGTTCGTGCAAGCAAAGATGTTGCTGAGAAGAAGCAAAC
TTTGTTGAGTGATTGTCCTGAAAATGTGGACTACGTGTTTTGTTTGCATGGGTAAAAATA
AAAGTGGGAAATTGCAGATGCAGATTCATTGCTAAAAAAAAAAAAAAAAA



Homology of Contig U35_19702 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None