barSeed - Barley Seed Development Database

Probe CUST_30686_PI390587928

Source Contig U35_1054

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30686_PI390587928	Hv_44K_v2	CTCTGCGTCTCGCGACTTGGATGAATAATAAAACAGTCAAGGAAAATTCCACGCAAAAAA	671	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.598	6.165	1.406	0.789	0.266	0.344
Raw	329.962	506.398	94.593	86.064	9.485	14.379

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC03517	723	1e-23	653 - 712	98	59 / 60	plus	ABC03517
Harvest35	U35_1054	742	3e-25	672 - 731	100	60 / 60	plus

Contig Sequence (742 bp)

>U35_1054 742 Hv_44K_v2
AGGAAACACCCTGCGGACCAGCACACGCTAGCCTAGCCAAGCAAGACCCGAGCAAGCCAC
ACTCTCCAGCACCAGCAGCGGCCGGCGGCAAGCACAGCGACCAAAATGGCCACCATCAGC
GCCGCCGCGGCGACCACCGTCGTCGCCCGTGCCGCGATCGCCAGGCCGCAGGCCCTAGGT
CTGCCCCAGCTGAGGACGAGGGGCGAGAGGGTGAGGTGCAGCTACTCCAAGGAGGCGACC
CCTGCCGCCGCCGCCCGTGGCGCCGGCGCGTCCCTGCTCGCCGCGGCGGGCGCGGTGACC
GCGTCCGCGGGGCCGGCGCTCGCTCTGGTCGACGAGCGGATGTCGACGGAGGGCACCGGG
CTCAGCCTGGGGCTGAGCAACAACCTGCTGGGGTGGATCCTCCTGGGCGTCTTCGGCCTC
ATCTGGTCGCTCTACACCGTCTACACCTCCGGCCTCGACGAGGACGAGGAGTCCGGCGGC
CTCTCGCTCTAAGCTGCGTACACATTAGCTTCCCCCCGTCGCCTCATGTAATCCGCTCAC
GAGCATCGCCATGATCGGTGTAATGTAATTCCAGACATGGATATTTGTATCTAAGCGTTT
CCATTCTGAAAAAAAAAAAAAAAAAAAAGAGATGTTTCGCCGTCAGATGGTTTGCTTGCC
ACCCTTGGACACTCTGCGTCTCGCGACTTGGATGAATAATAAAACAGTCAAGGAAAATTC
CACGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1054 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None