barSeed - Barley Seed Development Database

Probe CUST_30684_PI390587928

Source Contig U35_1056

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30684_PI390587928	Hv_44K_v2	ACGTGGTTGTTTCTATCTTTGTGAGCACTGTTTGCTTTGTGCCTATGATCTTATCTTTAA	2275	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56330.1	2272	6e-24	2206 - 2264	100	59 / 59	plus	ABC03142 ABC03143 ABC03767
JLOC1	JLOC1_36421.1	2214	3e-24	2125 - 2183	100	59 / 59	plus
Harvest21	ABC03142	351	1e-24	273 - 331	100	59 / 59	plus	ABC03142
Harvest35	U35_1056	2355	3e-25	2276 - 2335	100	60 / 60	plus

Contig Sequence (2355 bp)

>U35_1056 2355 Hv_44K_v2
CAGCTCGCCACGCCGCAGTTGGGAGCCAGGCCCCCGGCTCTTATCAAACCCTAAACCAAA
AAAATACCTCAAAAAAATCCGCAAAACCACGAAAAAAAAATTCTATCCTTCGATCGGTGA
TGGCGGCGCAGGCGGCGAGCTCGGCGTCGGAGGGCGGCTCCCCGGCCGCGGCGGCCGCTG
CGGCTGCGGCGGCGGCGTCGTCGTTCCCGGCCACGTCGCTGTACGTGGGCGACCTAGACG
TGAGCGTGCAGGACGCGCAGCTCTTCGACGTCTTCGCCCAGATCGGCGGCGTCGTGTCCG
TGCGTGTCTGCAGGGACGTCACCTCGCGGAAGTCGCTCGGATACGCCTACGTCAACTACA
ACACCCCAGCCGACGCTGCACGGGCTCTTGAAATGCTCAACTTCACTCCTATCAACGGGA
GGCCTATCAGGATAATGTATTCTAACCGTGACCCCAGCTTGCGCAAGAGTGGCACAGCAA
ATATATTTATTAAGAATCTTGACAAGTCAATTGACAACAAAGCTTTGCATGACACATTTT
GTGTGTTTGGAAACATTCTTTCATGTAAAGTTGCAACAGATCCTGCTGGGGAATCAAAGG
GCTATGGCTTTGTTCAGTATGAGCGGGATGAGGCTGCTCATGCTGCTATTGAGAAACTCA
ATGGGATGCTTATGAATGACAAGAAGGTTTATGTTGGGCCTTTTGTTCGTAAGCAGGAGA
GAGATAACTCTCCAGGCAGTGTCAAGTTCAATAATGTCTATGTAAAGAACCTAGCTGAGA
CTACCACTGAAGATGACTTGAAGGAAATCTTCGGGAAGTTTGGAACAATAACAAGTGTTG
TTGTAATGCGGGATGGGGATGGAAGATCCAAGTGTTTTGGATTTGTGAACTTTGAAAGTC
CAGATGAAGCTGCTCTGGCTGTTCAAGATTTGAATGGCAAGAAATTTAGTGACAAGGAAT
GGTACGTTGGAAGAGCGCAGAAGAAGTCGGAAAGGGAGATGGAGTTGAAGGAGAAGTTTG
AAAAGAACCTTCAAGAGGCAGCAGATAAGTATCAAAACACCAACTTGTATCTGAAGAACT
TAGATGATACTGTTGATGATGAAAAGTTGCGAGAACTTTTTGCTGAGTTTGGAACTATTA
CTTCCTGCAAGGTTATGCGTGATTCCAATGGTGCAAGCAGAGGTTCTGGATTTGTTGCTT
TTAAATCTGCTGATGATGCTTCCCGAGCTCTTGCTGAAATGAACAACAAGATGGTTGGCA
ATAAACCACTTTATGTTGCACTCGCACAGCGCAAGGAAGACAGGAAAGCTAGGCTGCAGG
CACAGTTTTCACAAATGCGTCCTGTTCCAATGGCTCAAACTGTTGGTCCTCGTATGCAAA
TGTTACCTCCTGGTGTTCCGGTTGGTCAGCAAATGTTTTATGGCCAGCCACCAGCGTTTA
TTAACCCCCAGCCTGGGTTTGGCTTCCAGCAACCCTTCATGCCTGGAATGAGGCCAGGTG
GTGCTCCGATGCCAAACTTTATGATGCCTATGGTTCAGCAAGGACAACAACCACAACGCC
CAGCTGGTAGGCGAGCTGGTGCTGGGGGAATGCAGCAATCCATGCAGATGGGTCAGCAGC
AGATGATGGGTAGGGGTGGTGGTCGTGGTTACCGCTATCCAACTGGGCGTGGCATGCCTG
ATCCTGCTATGCATGGTGTTGGGGGTGTGATGACATCCCCATATGAGATGGGAGGCATGC
CTATGAGAGATGCCGGTGCGTCACAGCCAGTTCCAATTGGGGCATTGGCTTCTGCACTTG
CCAATTCACCCCCAGAGACGCAAAGAATGATGCTTGGCGAGAACTTGTACCCTCTTGTTG
ATCAGCTGGAGCACGACCAGGCTGCCAAGGTTACTGGCATGCTTCTGGAGATGGACCAGA
CCGAGGTGCTTCACCTGCTTGAGTCGCCAGACGCTCTCAAGGCCAAGGTTGCTGAAGCCA
TGGAGGTTCTCCGCAGCGCTCAGCAGCACACCAACCAGTCCCCCGAGCAGCAGCTGGCTT
CGCTCTCGTTGAATGACGGCCTCATCTCTTCCTGAGCTAAACAGCGACAATTTTTGCACC
ATATCAAACTTATCTAGACTGAAAATGACTTGGTTTATTTGAGACTTAGCTTTTGCCAGT
AGTTGAACTAGTCTTTTAGGCTTCCCATGGATTGGCTTATTTTATTTGCATGGATTGGTT
ATTTTGTTTAAGGTGTCCTCAGGGTTGTCACCGAATCAAAAAAAAAAAAAAAAAAACGTG
GTTGTTTCTATCTTTGTGAGCACTGTTTGCTTTGTGCCTATGATCTTATCTTTAACTCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_1056 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g02700.1	663	protein\|polyadenylate-binding protein, putative, expressed
Brachypodium v1_2	Bradi3g20460.1	664
Arabidopsis v10	AT1G49760.1	671	\| Symbols: PAB8, PABP8 \| poly(A) binding protein 8 \| chr1:18416740-18419753 FORWARD LENGTH=671