barSeed - Barley Seed Development Database

Probe CUST_30678_PI390587928

Source Contig U35_19712

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30678_PI390587928	Hv_44K_v2	CTGCATATGACTCGACGATATTAGCCGCATTATTTTTCCAAGTTTGTTTCCTGATTTTAA	1168	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.495	1.480	0.962	0.879	0.388	0.398
Raw	6846.393	10527.543	6083.863	8822.910	1342.560	1508.900

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16682.4	1922	9e-22	745 - 802	98	57 / 58	plus	ABC17479 ABC17956 ABC47518
MLOC	MLOC_16682.2	1229	9e-22	1168 - 1225	98	57 / 58	plus	ABC17956 ABC47518
JLOC1	JLOC1_11509.2	1694	5e-22	1465 - 1522	98	57 / 58	plus
JLOC1	JLOC1_11509.1	1428	5e-22	1199 - 1256	98	57 / 58	plus
Harvest21	ABC17956	1020	3e-25	948 - 1007	100	60 / 60	plus	ABC17956
Harvest21	ABC47518	235	8e-21	49 - 106	97	56 / 58	minus	ABC47518
Harvest35	U35_19712	1241	3e-25	1169 - 1228	100	60 / 60	plus

Contig Sequence (1241 bp)

>U35_19712 1241 Hv_44K_v2
AGGCGCTGATTAGCTACAGGGAGCCCGGGCGGCATAAACCCTAGGAACCCCGCGGCTCTT
CCCCCCCTCTCTCTCTCTCTCCCTCTCCCTCCGACAGAGCACGGCGCGACCCGCCGACCG
TGGGAATGGCCGCGGAGACCGACGCGACGGCGCCCGGCGGGCTCGCGGGGGAGATGGAGG
TCGAGGCGTACCGCCGCCTCTTCCCCCTCGCGTTCCTCGAGCGCCACCTCCGCGAGTCCG
TCCGGCCCGACGCCCGACGCCTCGCCGAAGCCCGCCCCACCACCGTCGCGCTCGGCGCCG
TCTCCTCCGCGCACGGGTCCGCCCTCGTCCGCCTCGGCGACACCGCCATGCTCGCGTCGA
TCAAGCTCGAGGTGATGTCGCCCCCCGCCGAGACCCCGGACCAAGGATCAGTCGCTGTGG
AGTTCCACATGCCGCCTATCTGCTCCCCGCTTGTAAGACCAGGACGGCCAGCGGAGGCTG
CGCCGGTTATCTCCAAGGCCCTGGAGGACGTCCTCATGAGCTCTGGGATGCTAAATTTGA
AGGAGCTCTGTTTGATCAGTGGGAAGGCTTCGTGGGTAGCATACTTGGATGTCTATTGTT
TGAATGCCGATGGATCTCTTTTCGATGCTGCATTGATTTCAGTGGTGGCTGCATTTACAC
ATTTGGAAATTCCTCTGGTATCTGTTGGTGACGATGGTAGGGTGTTTACTGTTGGAGGCA
ATGAAGGCAAAACCAAATATGAATTGGTAAACAGAGAAAAAAGGAAGCTTACTCTTGGTG
ACATTCCATTTCCTCTCACATGTGCACTCCACAAGGATAGTATTCTAGTGGACCCAACTG
CTGAAGAAGAATCGATAATAGAGACCTCTGTGACAGTTGTTCTAGATTCTTCGGGCCGCT
TAGTGTCAATACAAAAACCTGGAGGTGGAGTGACGTCCATGGCAGCTATTAAGGCGTGCA
TTGGCTTGGCGAAAGAAAGAGGACAAAAGTTGAAGGAAATACTCACGGACTCCATTGAAG
CAATGGAAGTCGACCAAGCTGAATAAGTCGGTGCAAATAGTGCTAATTCAGTGGTTGTAC
TGCCACTGGTAGTGACATAGAAATTTTGTTGCTTTTAACTGTGGGATTATTTTTCTAGTG
ACGAACGCAAGATGTAACAATCCGTACCCTGCATATGACTCGACGATATTAGCCGCATTA
TTTTTCCAAGTTTGTTTCCTGATTTTAAAAAAAAAAAAAAA

Homology of Contig U35_19712 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g20689.1	307	0.0	protein\|exosome complex exonuclease, putative, expressed
Brachypodium v1_2	Bradi4g19975.1	308	0.0
Arabidopsis v10	AT1G60080.1	302	2e-121	3-5-exoribonuclease family protein \| chr1:22152605-22154339 REVERSE LENGTH=302