barSeed - Barley Seed Development Database

Probe CUST_30677_PI390587928

Source Contig U35_19713

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30677_PI390587928	Hv_44K_v2	ATCCTTCACCGGAATATAAGCTCCAAATGCATCCTCTTGGATGACGACTATGAACCGAAG	607	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.150	0.478	1.309	2.828	1.225	2.015
Raw	3.165	25.476	58.056	222.465	32.425	57.614

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19405.2	2117	2e-24	615 - 674	100	60 / 60	minus	ABC10249
MLOC	MLOC_19405.1	2745	2e-24	628 - 687	100	60 / 60	minus	ABC10249
JLOC1	JLOC1_13456.2	3119	8e-25	2063 - 2122	100	60 / 60	plus
JLOC1	JLOC1_13456.1	2459	8e-25	1403 - 1462	100	60 / 60	plus
Harvest21	ABC12541	733	3e-25	608 - 667	100	60 / 60	plus
Harvest35	U35_19713	744	3e-25	608 - 667	100	60 / 60	plus

Contig Sequence (744 bp)

>U35_19713 744 Hv_44K_v2
TTCAACAAAGAGCAAGAACACTGCAGCAATTGTTGGAGCTATTGTTGGAGTGGTAGTTGT
GATCATAATTGTTGTGATAGTTGTGTTCTTTTGTCTGCGGAAATTACCAGCTAAGAGAGC
AAAAAAGGATGAGGATGAAAATAAGTGGGCAAAGAGTATCAAAGGAACAAAAGCAATCAA
GGTGTCTATGTTTGAGAATCCAGTTTCAAAGATGAAACTAAGTGATCTTATGAAGGCCAC
CAAACAGTTCAGCAAGGAAAACATCATAGCTACTGGAAGGACAGGGACTATGTACAGGGC
AGTGTTACCTGATGGTTCTTTTCTTGCTGTCAAAAGGCTACAAGATTCACAACATTCTGA
ATCACAGTTCACTTCAGAAATGAAGACACTTGGCCAAGTAAGGAACCGCAACTTGGTTCC
TCTTCTTGGATTTTGCATTGCTAAGAGGGAGAAGTTGTTGGTGTACAAGCACACACCCAA
AGGTTCACTCTATGATCAGTTACACGAAGAGGGGAAAGATTGCAACATGGATTGGCCTCT
GAGGTTAAGAATTGGTATTGGTGCAGCAAAAGGCCTAGCATATCTTCACCACACTTGCAA
TCCTCGAATCCTTCACCGGAATATAAGCTCCAAATGCATCCTCTTGGATGACGACTATGA
ACCGAAGATTTCGGATTTTGGGCTTGCTAGGCTTATGAATCCCCTAGACACCCATCTCAG
CACATTTGTGAACGGTGAATTCGG

Homology of Contig U35_19713 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g34270.1	608	3e-137	protein\|inactive receptor kinase At1g27190 precursor, putative, expressed
Brachypodium v1_2	Bradi2g25320.1	605	6e-145
Arabidopsis v10	AT5G48380.1	620	1e-101	\| Symbols: BIR1 \| BAK1-interacting receptor-like kinase 1 \| chr5:19604584-19606532 REVERSE LENGTH=620