barSeed - Barley Seed Development Database

Probe CUST_30668_PI390587928

Source Contig U35_1062

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30668_PI390587928	Hv_44K_v2	TTTGCAGCAATTATGTTAAACTTGATTTGAGCAGAAAATGTTACTCCCTCTGTTCACTGA	460	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.727	1.637	1.401	0.913	0.391	0.479
Raw	5683.247	8637.833	6309.117	6362.013	943.523	1309.133

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC03457	1217	2e-21	1129 - 1184	98	55 / 56	plus	ABC03457
Harvest35	U35_1062	536	3e-25	461 - 520	100	60 / 60	plus

Contig Sequence (536 bp)

>U35_1062 536 Hv_44K_v2
CCATCATTGAGGATGCTAGGCACCCGGCCAAATACCGGATGCTGGTTGGCATGGTTGATG
TTATCTTTTCTGATGTCGCACAGCCTGACCAGGCTAGAATCTTAGCCCTTAACGCATCAT
ACTTCTTGAAGAATGGCGGCCACTTTGTCATTTCCATCAAGGCAAACTGTATCGACTCCA
CCCAGGCTGCTGAGGCTGTGTTTGCGAGCGAAGTGGAGAAGCTCAAGGCCGACCAGTTCA
AGCCCTCGGAGCAGGTGACCCTGGAGCCCTTCGAGCGCGACCATGCCTGCGTCGTCGGTG
GTTACAGGATGCCCAAGAAGCAAAAGTGAAGTTGAGAAGAAGAAGAAAAGAAGAGGCCTT
GTTGTTTCTGCAATCTGCTTGCTCAGATGTACTAGTAGGTAGTAGTAATGTGACCCATGT
GTATGGGGTTTTGTGGAAACTCTGAGACAATTCGTGCTGTTTTGCAGCAATTATGTTAAA
CTTGATTTGAGCAGAAAATGTTACTCCCTCTGTTCACTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_1062 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g57590.1	307	2e-64	protein\|rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed
Brachypodium v1_2	Bradi3g55810.4	214	3e-65
Arabidopsis v10	AT5G52470.1	308	2e-60	\| Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 \| fibrillarin 1 \| chr5:21294290-21296509 FORWARD LENGTH=308