barSeed - Barley Seed Development Database

Probe CUST_30666_PI390587928

Source Contig U35_1064

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30666_PI390587928	Hv_44K_v2	AGCAATTGTTGACTTGTTGGCAGTGTTATCCATGAAACCATGACTTCCCATTTGCACAAA	943	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54414.2	1292	2e-23	1146 - 1203	100	58 / 58	plus	ABC03456 ABC03457
JLOC1	JLOC1_35022.2	1003	1e-23	893 - 950	100	58 / 58	plus
JLOC1	JLOC1_35022.1	1264	1e-23	1154 - 1211	100	58 / 58	plus
Harvest21	ABC03456	1017	3e-25	944 - 1003	100	60 / 60	plus	ABC03456
Harvest35	U35_1064	1017	3e-25	944 - 1003	100	60 / 60	plus

Contig Sequence (1017 bp)

>U35_1064 1017 Hv_44K_v2
GGGACGCCCAGGGGCCGCGGTCGTGGCGGGGGAAGGGGGGCGCCCGGCATGAAGGGCGGG
AGCAAGGTGGTCGTGATCCCGCACAAGCACGACGGCGTCTTCATCGCCAAGGCCAAGGAG
GACGCGCTCTGCACCAAGAACATGGCCGCCGGGGAGTCCGTCTACGGCGAGAAGCGCGTC
TCGGTCCAGAACGAGGACGGGACCAAGGCTGAGTACAGGGTCTGGAACCCCTTCAGATCA
AAGCTGGCTGCCGCCGTTCTTGGAGGTGTCGACAACATCTGGATTGCTCCTGGTGCTCGT
GTGCTGTATCTTGGTGCCGCCTCAGGAACGACGGTGTCCCATGTGTCTGATATTGTTGGA
CCGACTGGGCTGGTGTATGCTGTGGAGTTCTCGCACCGCAGTGGCAGGGATCTTGTCAAC
ATGGCCAAGAAGAGGACCAATGTGATCCCCATCATTGAGGATGCTAGGCACCCTGCAAAG
TACCGCATGTTGGTCGGCATGGTTGATGTTATCTTCTCAGATGTTGCACAGCCTGATCAG
GCTAGGATCTTGGCCCTTAATGCTTCATACTTCCTGAAGAATGGTGGTCACTTTGTCATT
TCAATCAAGGCCAACTGTATCGACTCCATCCAGGCTCCCGAGGCCGTGTTTGCTGCTGAA
GTTGAGAAGCTGAAGCTTGAGCAGTTCAAGCCTTCGGAGCAGGTGACCCTGGAGCCCTTT
GAGCGTGACCATGCCTGTGTCGTCGGTGGATACAGGATGCCCAAGAAGCAGAAGGCGACT
TGAAGGAAATAGTTATATATGTTATGCGCTATGATGTTCTATCGTTTGTTAGTATTAGGT
CCTAGGTGTTAGGTGTTGGTGATATGATCCGACAATGTTGGTTCTATAGCCTAGTTCGTT
TATATGGTGTTGGTAAGTGGCTGAATGATTTTGCATGCCTGTTAGCAATTGTTGACTTGT
TGGCAGTGTTATCCATGAAACCATGACTTCCCATTTGCACAAAAAAAAAAAAAAAAA

Homology of Contig U35_1064 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g08360.1	310	2e-159	protein\|rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed
Brachypodium v1_2	Bradi1g32010.1	303	5e-161
Arabidopsis v10	AT5G52470.1	308	2e-147	\| Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 \| fibrillarin 1 \| chr5:21294290-21296509 FORWARD LENGTH=308