barSeed - Barley Seed Development Database

Probe CUST_30660_PI390587928

Source Contig U35_19720

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30660_PI390587928	Hv_44K_v2	AAGTGTATCATTAGCTGTTGTTTGTTGGCCCATCTGCCCAACTTCTATGTAAGCTGTGAT	1359	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15697.1	2590	2e-24	161 - 220	100	60 / 60	minus	ABC05548 ABC12464
MLOC	MLOC_15697.2	1561	2e-24	46 - 105	100	60 / 60	minus	ABC05548 ABC12464
JLOC1	JLOC1_10783.1	1623	8e-25	1366 - 1425	100	60 / 60	plus
Harvest21	ABC12464	1500	3e-25	1360 - 1419	100	60 / 60	plus	ABC12464
Harvest35	U35_19720	1500	3e-25	1360 - 1419	100	60 / 60	plus

Contig Sequence (1500 bp)

>U35_19720 1500 Hv_44K_v2
CAGCTCCCCCCGAGCAGGGTACGTTCGCCGCGTCCGCACCACCACGAGACCGATGGCCGT
CGCCGCCTCGCCGCAAGCCACGGCGGCCGCCGCCGCCCTCTCCAGGCACAGATCCGCCGC
GGTCCCACCAGTGTCGAGGAGCGTGCGGGTGGCCGCCGCGGGGAGGAGGCCGCCGGGCTC
GTCGCGGGCGCGGGGCGGGCTGGTGGCCCGGGCCGCCGTTGCAGCCAAGGCTGAGGCGCC
GAGCTCCTCCGATTCGGGCGGTCATGAGGTCTTAATGTTTGAGGCCCTTCGTGAAGCCAT
GATAGAAGAGATGACTTTGGATCCGACAGTGTGCATAATTGGTGAAGATGTCGGTGACTA
TGGAGGTTCATACAAGGTATCCAAAGGCTTGTCTGAGATGTTTGGAGACCTCCGAGTCCT
TGATACCCCAATAGCTGAGAATTCTTTCACCGGTATGGGAATTGGAGCAGCGATGAAGGG
GCTCAGACCAGTTGTCGAGGGCATGAACATGGGTTTCCTCCTCCTTGCCTACAACCAAAT
CTCAAACAACTGCGGTATGCTTCCTTATACATCGGGCGGCCAGTTCAAAATCCCAATTGT
GATCCGAGGCCCTGGCGGCGTCGGTCGTCAGCTTGGCGCGGAGCACTCGCAGCGTCTTGA
GTCCTACTTCCAGTCGATCCCGGGCATCCAGATGGTCGCTTGCTCTACCCCTTACAACGC
CAAGGGTCTTCTGAAGGCTGCCATAAGGAGCGACAACCCCGTGGTGCTGTTCGAGCATGT
CCTTCTATACAACCTGAAGGAGAAGATCCCCGACGAGGAATACATCTGCTGCCTGGAGGA
GGCCGAGATGGTGCGCCCGGGCTCGCAGCTGACCATCCTGACCTACTCCCGCATGAGGTA
CCACGTGATGCAGGCCGTCAAGACGTTGGTGAACAAGGGGTACGACCCGGAGGTGATCGA
CATCAGGTCGCTGAAGCCGTTCGACCTGCACACCATCGGGAACTCCATCAAGAAGACCCA
CCGCGTGCTGATCGTGGAGGAGTGCATGCGGACGGGCGGCATCGGCGCCAGCCTGAGGTC
GGCCATCATCGACAACTTCTGGGATGAGCTGGACACTCGCCCCGTGTGCCTGTCTTCGCA
GGACGTGCCGACCCCCTACGCCGCGACCCTGGAGGACGCGACCGTCGTGCAGCCCGCGCA
GATCGTGGCCGCGGTCGAGGAGATCTGTCAGTCGTAACGCTGTCATGTGGTACGTACGTG
TTTTTGGGATTCAGAAGCAGCGTGCGTGTCCGGTTTGTTTTGTCGTGTAATTAGTGGTTT
TCGTCGTCCCGTTGACGTTGTGTTATACTGGGAAGACTGAAGTGTATCATTAGCTGTTGT
TTGTTGGCCCATCTGCCCAACTTCTATGTAAGCTGTGATGCTNCTGGGTTTTGATCTCTT
TCTGCTTGGGGGGTGAGTGTGCGNCCCCTGTTATTATTTACCACTACCCCCTAGTATATC

Homology of Contig U35_19720 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g42230.1	392	protein\|transketolase, putative, expressed
Brachypodium v1_2	Bradi4g01460.1	392
Arabidopsis v10	AT1G30120.1	406	\| Symbols: PDH-E1 BETA \| pyruvate dehydrogenase E1 beta \| chr1:10584350-10586477 REVERSE LENGTH=406