barSeed - Barley Seed Development Database

Probe CUST_30656_PI390587928

Source Contig U35_19724

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30656_PI390587928	Hv_44K_v2	ACAGTCAACAGCGACCAGAGAAAGGAATAGGCGAAAACCCTAAACCTCGCCACCGGCCAC	1	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59703.1	3292	2e-24	69 - 128	100	60 / 60	plus	None
JLOC1	JLOC1_38867.1	3221	8e-25	63 - 122	100	60 / 60	plus
Harvest35	U35_19724	471	3e-25	2 - 61	100	60 / 60	plus

Contig Sequence (471 bp)

>U35_19724 471 Hv_44K_v2
AACAGTCAACAGCGACCAGAGAAAGGAATAGGCGAAAACCCTAAACCTCGCCACCGGCCA
CGGCCATGGCGGCGACCACCGCTACCCCCACCTTCCTCCGTGCGACCGAGCTCCGCCTCC
TCCGCTGCACCCTCCCTTCCCCGATCTCCCAACCAGCTCCCCCCTCACCTCCCCCAGAAC
ACCCGCTCGGTCCTGTCGTGTCCTCTGCCGTCGCCGCCGTCGAGGTCGGGGACTACGTGG
CTGCTATCGCCTCCGCCGTCCCCCACATCTTCCACCCCTCCGCCTTCGCCGAGGTTGCCC
AGGGCTCCCCAACGCAAGCTTACGCCGACCTCACTGCCGCTGCCGAGGCGTTCCTCCGGG
AGGATGGCGGAGGGGCCGCGAGCGAGGGGTTCCAGTGCAGGTGTGCGCTTGTTCTCTCCG
CGGCGGTGGCCGCGCTGCTCGCATTCACGCAGCAGAACGTGACGGGACCGT

Homology of Contig U35_19724 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None