barSeed - Barley Seed Development Database

Probe CUST_30654_PI390587928

Source Contig U35_19726

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30654_PI390587928	Hv_44K_v2	TGTTATCCCACGGTACCATCTTGAATTAATGAATCTCGGCTACCTTTTAGTTCGAAAAAA	1717	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.767	1.627	1.151	0.882	0.373	0.392
Raw	1144.857	1682.461	1032.000	1248.059	185.601	212.062

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52821.1	3260	7e-23	3122 - 3178	100	57 / 57	plus	ABC14880
JLOC1	JLOC1_33867.1	2300	4e-23	2094 - 2150	100	57 / 57	plus
Harvest21	ABC14880	1531	3e-25	1458 - 1517	100	60 / 60	plus	ABC14880
Harvest35	U35_19726	1866	3e-25	1718 - 1777	100	60 / 60	plus

Contig Sequence (1866 bp)

>U35_19726 1866 Hv_44K_v2
TGGTTCTTCTCCGCGCTCACCTTCCACGACGCCCCCGACGACCTCCGCTCCATTCTCCAC
CTCCTCTCCGCCTTCACCTCCTCATCCCCTGGCGCCGCCAAGCCCCTTGCGCTCCTCGCC
CCCGTCGTCTCCGAACTCTTCCACTCCGCCAAGCCCCGCAGGGAGATCGAGGCGCTCGTC
GAGGCTGTCCTCAGCTACATCAGTATCTGCAGCAGCCGCCCCGCTGGCGGCGAGGTCAAC
GCCGACGCTGGGAGGCTCTTGCCAGGTTTCGGGGAGCTGGTCAAGGTGTGGAGCGTGCGC
AACTCGAGGGACAGGTGCCCGTTCCAGGTGCTTTTCCCGCTAGTCGGAGAAGAGGCCAGG
CGGGAGCTGATGAAGGACGGCTGCAGCGTCACTTTCCTCGCCGGTGTTGTGGTGGCGGAG
GCGTTCCTGCTCAGGCTCTGCCTCAAGGTGCAGGGTGTGGCTGGGTTACCACGTTCTGAG
CTGCAGAAGGAGCTAAGGATCTGGGCGGTTAGCTCTATCTCGGTCTTCCAGAACCAGCAA
TTCTTCGGAGTCCTGCTGAACATGCTTGTAAACCCTCCGCTGCCTGTTTATTCACTACTG
AGTGCTGATGATGAGATCCTGGTGAGAGATGTCCTTTATGATGCTTTGATCTTGGTGGAT
TATTCATTCCTCAATGGAGCTGAAGTTGATCAAGCTGATAGTTCCCTTTTGCCTATTTTT
GTGTCAAGATTGGTTATAACTCTTGATGCCATCAATGATGCCAGGGGCAAAGGAGATCAA
GGGAGAGCAATGTCGTTTATCAACGCCTTCTCGACTTCCAATATTCCCATTTACCTTGCT
AGGTGGGCTGCTCGTCAAGCTGGCACCGACCAACTGGGCAAACCAATTGCTATCACACCT
CGAGCTTTTCTGAAGTGGCTTGTAGATCTTGAAGATAAGGGGCTCAAAGTCTTTGGAGAG
AACTGTTCAAGGATTAGGGAGAGGCTAATGCATGATGATCCCAAGAATGGTTATCACTAT
CAGAGCAAGATGAATCATTCAGACGCTGACCTTTTCTTCATTGACAAGCAGAGTCACCAG
GAGGGTATATACACAAAAGGTGGNGAGGATGAAGAAGCCATGGAGATGGAGACAGCTGAT
AACGCTTTCATGGCTGCTGCTCAGTCGATGAAGGTGATGGCGAATGGCATGAGGAAAAGG
AAGGACTGTGGAAATGAAGACGCTTCAGTTGTGAAGTTTGTGAAGTACAAGGCTGAAGAC
AGCTTGGTTAAGGATCACTTCTCGTCTGCTGCTACCAATGGCGGCATGAGCAGTGGTAGC
GAGGTGGAGAACCCACAGTCAGATGATGAGATGGAAGAAACAGCTTGATATGGGTAGAAG
GCGATGGATTCACTCACTAATGCTTACTTGGGGAGAGACGTTTTGGGACAAGTGCCTTTC
TGGAGTCTGCAAGACTGTTTGCTGTTTTGGTTTCCGCCTCTTAATGATGTCATGAAGTAG
TAGTATCTGGTGTGGTTCCTGCTCGATGACGATGAGTTGAAGCGGGTTCCTGCGGTCCGA
CTCCAGCAGGCTTACGGATATAGTAGTAACTGGTAGCTAACCTAACTTGGCGCGTGATGC
CATGAGCTATATCGTCATGTTCCTTGTTATGTGCAATTAGAGACTTTCAACATGTAGATT
TGCTTCCAAGACTTCTATCATAGAAGAGTACCTTTGCTGTTATCCCACGGTACCATCTTG
AATTAATGAATCTCGGCTACCTTTTAGTTCGAAAAAAAAAAAAAAAAAGATGTTGGATAT
TGTGCCTGGCGTTTATTTGTCAGCAAAAATCCAAGAGTACTTTTATTTTAAAAAAAAAAA
AAAAAA

Homology of Contig U35_19726 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g41640.1	525	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi2g42700.1	517	0.0
Arabidopsis v10	None