- Probe CUST_30646_PI390587928
- Source Contig U35_1074
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_30646_PI390587928 | Hv_44K_v2 | TACCACCTACTCGCATCAGTGTGTAAGAACGAATAAATAGTTTATGTGTGTTACTTCGTC | 476 | GeneList: midnightblue MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 0.076 | 0.188 | 0.373 | 2.286 | 2.718 | 4.202 |
Raw | 37.182 | 149.174 | 239.193 | 2157.790 | 952.065 | 1626.652 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_37570.1 | 817 | 2e-24 | 40 - 99 | 100 | 60 / 60 | minus | ABC01432 ABC38051 |
JLOC1 | JLOC1_24334.1 | 590 | 8e-25 | 25 - 84 | 100 | 60 / 60 | minus | |
Harvest21 | ABC01432 | 602 | 3e-25 | 485 - 544 | 100 | 60 / 60 | plus | ABC01432 |
Harvest35 | U35_1074 | 594 | 3e-25 | 477 - 536 | 100 | 60 / 60 | plus |
Contig Sequence (594 bp)
>U35_1074 594 Hv_44K_v2 GGTGCGCTGGCATCGAGTGTGGCCATAGTCGTGAACTGAGAAAAGAGCTACGTGCAAGGC AACGCCTGAGAAGATCGAGATGGGCTGCGACGACAAGTGCGGGTGCGCCGTGCCGTGCCC CGGCGGCACGGGCTGCAGGTGCACCTCGGCGAGGAGCGGCGCGGAGCACACCACGTGCGC GTGCGGCGAGCACTGTGGGTGCAACCCGTGCGCGTGCGGGCGCGAGGGGACGCCGTCCGG GCGGGAGAATAGGCGGTCCAACTGCTCCTGCGGCGCGGCCTGCAACTGCGCTTCATGCGG CTCGACCGCCTGATCGCGTCGACGCGCCACTAGTCGTGAACTGATGCACCAGTAGTCGAG CTAGCTACTGAGTTAGCCATAAATAAGTGCCGCTGAGCCGTGATCAGTCATGTGTGTGCG TGTCGTGTACTACTACCTTGTTTGTGCGTGTGTGGAAAGTGTTGTGTATATTTACCTACC ACCTACTCGCATCAGTGTGTAAGAACGAATAAATAGTTTATGTGTGTTACTTCGTCTAAA AAAAAAAAAAAAAATAACTGAAGCTTTTGGATGGCTCTAAAAAAAAAAAAAAAA
Homology of Contig U35_1074 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |