barSeed - Barley Seed Development Database

Probe CUST_30645_PI390587928

Source Contig U35_1075

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30645_PI390587928	Hv_44K_v2	ATTTTCCTTCTTCGCCCTCAGCAGAAACGAGATCTCAGATCAGCCAGAACAAATTGACTA	841	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.956	1.304	1.296	0.708	0.616	0.724
Raw	99.612	94.566	90.598	70.638	23.167	30.405

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_10183.2	1152	6e-21	792 - 849	97	58 / 60	minus
JLOC1	JLOC1_10183.1	1085	6e-21	725 - 782	97	58 / 60	minus
Harvest21	ABC03265	890	3e-25	534 - 593	100	60 / 60	minus	ABC03265
Harvest21	ABC42324	577	2e-21	299 - 356	97	58 / 60	plus
Harvest35	U35_1075	1200	3e-25	842 - 901	100	60 / 60	minus

Contig Sequence (1200 bp)

>U35_1075 1200 Hv_44K_v2
TGGAAATCACTGAACTCCCCACTCCCTCCAATAAGACTATGCTTACCGACCTCCTTGATA
CGCTCCACGCTCTTGTACCGCAGAGTTGACCCATAGGAGGCTCCAGTGTCACACGCCATG
ATCACACCATCCTTGTATTTCATTGCAATCACTGAGTTACCAGTCACATAGGGGTTCAGC
GTCCTCTGCGTCCCCTCGCCGCCTCCGGCCGCGTGGGAGTGAGATCCGTCCATGGATTCG
GGAGGGAGGGAGGGCGGGGATTCGATCTGGGTTGGCTTCGCTCGCCTCGTCAGGGGAAGG
CGCCGGCGGGGGTTCGGTCTGGAGAGAGAGAGAGAAGGGGGCGGTTGACGGCGACGACGA
CGACGACGACGTCGACGACGATGGGGAAGAGGACGATGATGAGGGGGTTGAGGGTGAGGA
GAAGGGGTCGGCGCCGCAGCAGGTGGTCGACATCTCCGACGAGGACGACGACGGCGGCGA
TGAAGAGGACGGTGGTGACGATGACGATGACGATGACGACGACGACGACGATGACGAGGA
GGACGACGATGAAGTGGATGAGGAGGAGGACCCCGAGGAGGAGTTAGGAACTAAATATCT
CGTGCAGCCACTTGGCCGTGCTGAAGATGAAGAGCATTCCAGTGACTTTGAGCCAGAAGA
AAATGGTGATGGTGCTGATGATGAGGAGATTGAGGATGATGATGCTGAAGAAGATGGTGA
GGATTCTGTTAAGGCACAATCCTCTTCAAAGAGAAAGAGGTCTGGTGGGGAGGATGAAGA
TAATGATGACGACGATGGTGATGATGATGGTGATGATGATGAGAAGCCTCCCTCAAAGCG
ATAGTCAATTTGTTCTGGCTGATCTGAGATCTCGTTTCTGCTGAGGGCGAAGAAGGAAAA
TAATCCTCTTGAAGAGGATTGTTGGTAAATGCTGTAGTTTTAGGACATCTGTGGTAGGTG
TAGCAGCTCGAACTTGAGTCTACCCATGTTAGTTGTTAGTGCATACTGCTGATGTTGATT
AGCAGCCTCTGGAAACTTCTGTATGAGCATGAGATATGGGGCTTGTTATATGCTTGTGTA
GCTTCTGATTAAAACCTGTGGAATGTGGATGCGCTTTGTTCTGAATCTTGTATTCATGAT
ATTTCTCTTCAACTGGTTATTGCCAGCTAGCTGTTATTACTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1075 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None