barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_30629_PI390587928Hv_44K_v2TTGCCCAAATACTGCAGTAACCTTGCACTTATATCCATGATTTTTTCTGCTCTGAAAAAA2244GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.1291.5931.1440.8610.3520.423
Raw 1408.4371713.2271050.7951270.039177.068233.920



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
Harvest21ABC0872823076e-222245 - 23049758 / 60plusABC08728
Harvest35U35_1776423073e-252245 - 230410060 / 60plus



Contig Sequence (2307 bp)

>U35_17764 2307 Hv_44K_v2
ACTCTGACCACCAACCAGATGTCAGCGGTGAGGCTTGTGGCAATTGGGAGGTGGCCCGAT
ACACTTAGGAACTTTAAGGTTGATGGTACCACTTATGATCCAAGTGATGGCAAGATACAT
GACTGGCCAACTTTGAACATGGATGATAACCTCCAGATGATCGCGAAGATAGCTGCACTC
TGCAATGATGCAAGTATTGCACACTCTGAGCATCAGTATGTTGCTACTGGGATGCCCACA
GAGGCTGCATTAAAGGTTTTGGTCGAGAAAATGGGGCTCCCTGGTGGATATACTCCATCA
CTGGATTCATCTGATTTGCTAAGGTGCTGTCAATGGTGGAACAACGATGCCAAAAGAGTA
GGGACTCTGGAATTTGACCGTACTAGAAAATCAATGGGAGTTATTGTAAAAAAAGCTGAG
ACTGGAAAGAATTTGTTGCTTGTGAAGGGGGCAGTAGAAAATCTGCTAGAGAGAAGTGCC
TATATTCAGTTACTTGATGGATCCGTCGTGCTCTTGGATGAGGGTGCCAAGGCACTTGTA
TTGTCAACACTTAGGGAAATGTCTGGCAGTGCGTTGCGCTGTTTGGGCTTTGCATACAAG
GAAGATCTGGCAGATTTTGCAACATATGATGGAGAAGAACATCCCGCTCACAAATATCTA
CTTGATCCTGCATACTACTCTTCCATTGAGAGTAATCTGATATTCTGTGGTTTTGTTGGT
CTAAGGGACCCTCCACGAGAAGAAGTCCACAAAGCAATTGAAGATTGCAGGGCTGCTGGT
ATACGTGTTATGGTGATAACAGGTGATAACAAAGAAACAGCAGAGGCAATATGCCGTGAG
ATTGGGGTTTTTGGCCCCAGTGAAAATATTAGCTCCAAGAGCTTTGCAGGGAAGGAATTT
ATGGCTCTTCCTGATAAGAAGAAGCTGTTGAGGCAAACAGGTGGCCTTCTCTTCTCAAGG
GCAGAGCCAAAACATAAGCAAGAAATTGTTAGGCTGCTCAAAGAAGATGGTGAAGTCGTT
GCAATGACTGGTGATGGAGTGAATGATGCACCGGCTCTGAAGTTAGCTGATATTGGAATT
GCGATGGGTATTACGGGGACTGAGGTTGCAAAAGAAGCTTCAGATATGGTGCTTGCAGAT
GATAACTTCAGTACAATTGTCTCAGCTGTTGGTGAAGGAAGGTCTATTTACAACAACATG
AAGGCTTTTATAAGATATATGATATCTTCGAACATTGGAGAAGTTGCCTCCATATTCCTC
ACGTCGGCTTTAGGCATCCCAGAAGGCCTCATTCCTGTGCAACTTCTGTGGGTCAATCTT
GTTACGGATGGCCCTCCTGCAACAGCATTAGGATTCAATCCACCAGATAAGGATATCATG
AAGAAACCTCCTAGAAGAAGTGATGATTCATTGATCACTCCTTGGATCCTGTTCCGCTAC
ATGGTTATTGGGCTGTATGTTGGGATTGCAACAGTGGGGATCTTTATCATCTGGTACACT
CATGGCTCTTTCCTGGGAATTGATCTGGCTAGTGATGGTCACACTCTTGTTTCATACTCC
CAGCTCTCAAACTGGGGCCAGTGCCCCTCATGGGAGGGTTTCAATGTGTCATCATTCACA
GCAGGGGCAAGGACATTCAACTTTGATGAAAACCCTTGTGATTACTTCCAGGGTGGCAAA
ATAAAAGCGACAACCCTCTCCCTGTCCGTCTTGGTGTCCATTGAGATGTTCAACTCACTG
AATGCCCTGTCTGAAGATGGCAGCCTTCTGAGCATGCCTCCATGGGTGAACCCCTGGCTT
CTTCTGGCAATGTCGGTGTCTTTTGGGCTTCATTTTTTGATCCTCTACGTGCCCTTCCTT
ACCCAAATCTTCGGGATTGTGCCCCTCAGTTTCAACGAATGGCTTTTGGTGGTAGCAGTG
GCCTTCCCAGTGGTCCTCATCGATGAGGTTCTTAAGTTTGTTGGGCGGTGCTTGACAGCT
CGTGCAAGAAAACAATTAGGAAAGCGGAAGGAAGAGTAGAAGGTAGTGATTGAGTAATAG
ATTGCAGGCTTGCCACGGGGGAGTAGACGTCTGGTGATACCCCATTATTTTTCTTGAGAT
CTGAGGGCTCTGCTCTTTGTTGAGCATGAAGGAAGTTAGGGTACTCTATAGAACTCATAA
TCATGCCTCGAGTTTAACAGACTCATTTATTCATTTGTAACAAAAAATGGTGTTATGAAT
GTGCTGGAGATACAGCATGGTTTCTTGCCCAAATACTGCAGTAACCTTGCACTTATATCC
ATGATTTTTTCTGCTCTGAAAAAAAAA



Homology of Contig U35_17764 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g17310.110630.0protein|calcium-transporting ATPase, endoplasmic reticulum-type, putative, expressed
Brachypodium v1_2Bradi1g66150.110630.0
Arabidopsis v10AT1G07670.110610.0| Symbols: ATECA4, ECA4 | endomembrane-type CA-ATPase 4 | chr1:2370305-2374196 REVERSE LENGTH=1061