barSeed - Barley Seed Development Database

Probe CUST_30613_PI390587928

Source Contig U35_17770

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30613_PI390587928	Hv_44K_v2	GCCGATGCTCTGCGTTCCTTACTCTTGTACACTAACTGTATTGTTACTGTCAGACCATTT	1338	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67717.1	800	2e-24	16 - 75	100	60 / 60	minus	ABC09804 ABC36967
JLOC1	JLOC1_44737.1	1170	8e-25	245 - 304	100	60 / 60	minus
Harvest21	ABC09804	1422	3e-25	1246 - 1305	100	60 / 60	plus	ABC09804
Harvest21	ABC36967	297	1e-23	79 - 138	98	59 / 60	minus	ABC36967
Harvest35	U35_17770	1527	3e-25	1339 - 1398	100	60 / 60	plus

Contig Sequence (1527 bp)

>U35_17770 1527 Hv_44K_v2
GGGTATGCTGAATGTTTTTCCGATCCATTATTTTACCAGACCCTGGCTGGGGTTAGCCCG
ACTAATCCCTTCGACCCCGCACCCTCCGTCTAATCGCGCCTATGGAGGGTTCCAAGGGGA
GCGACGGCGGCGGCGAGAGGCCCGGCGCCGACCACAACCCTAGCCCGGATCAGCCCCCGC
CGGCCGCCGCTCCCGGAAGGGAGGACGATGGCGCTGCGGCTGCCGCTGTCGCTGCCGCGG
CGGCCGAGGACGAGGACGAGGCGCGGCGCCCGTTCACCGCTCTCAGCCAGGTCGACGCCG
ACCTCGCCCTGGCGCGTGTCCTCCAGGAGCAGGAGCGGGCGTATATGATGCTCCGGATGA
ACGGAGTCGGCGGCGGCGGCGGCGGCGACGGTAGCGACTATGGGAGCTCGGAGGCCGGGA
GCTACGAGTACGACGAGGATGCCGAGGTGGACTACGAGGAGGAGCTCGAGAACCACCTTC
GCGTCCATCACCACGACCACCCGGGCGGCGGCGAGGCTGACGGGGACGACGATCTCGAGG
CTGAGGCTGATGGTCAGGGCGAGGGCGAGGGTGATGGTGAGGATCAAGGCGACGACGAGG
GCTCTGAGGAGAGCGAGTACGAGGAGGAGGGGTTCGATGAGGATGATGATGTCGAGCTAG
ATCTAGACCCTGCAGAGTATGAGGACGACGAGGCTTATGCGCGAGCGCTTCAGGACGCTG
AGGAGCGTGAGGTTGCCGCACGGCTTATGGCTCTTGCTGGTATCAGCGATTGGCGGGCGG
TGGAGCATGTCGAGGATCACATAAACGACGCACAGGATTCATGGCAAGAGGTTGATCCAG
ATGAGTACTCTTATGAGGAATTAGTTGCATTGGGTGATGTAGTTGGTACAGAAAGTAGAG
GTCTCTCTGCTGATACACTTGCTTCCCTACCTTCAGTAACTTACAAAACAAAAGATATGC
AAGATGGCAACACAGAACAATGTGTAATTTGTCGTGTGGAGTTTGAGGAAGGTGAATCTT
TGGTTGCACTTCCCTGCAATCATTCATACCATCCTGACTGCATCAATCAGTGGCTTCAAA
TAAATAAGGTATGCCCTATGTGCAGTGCAGAAGTTTCTACCTCAGCAAACAAGCAGGCAT
GACCAACAGTCGTTGGTAAACCAACTTCATCTTCATCAGAAAAGAAAAGAAAAAACGAGA
TGTTGGCACTTGGTGGGAGTATGTAGTAGCATCGTTGTAGTATCCCTGATGTTTAAGCCA
AAGCAGGCAGCAGAAGCTTCTACAGTACAAACTTGCCAGGGGACCCAGGGAAATGGAGCA
TATTTTTTTTTGCCTTCCGCCGATGCTCTGCGTTCCTTACTCTTGTACACTAACTGTATT
GTTACTGTCAGACCATTTTTTTCTCTGTGCCCGGTGTATTTTATGATTATCGCATTAATG
CATTGGGATTTAGATATTTAAAAAAAAAAAAAAAACTGGAGATAGATATGCAATATGGAT
GTGCTGGAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_17770 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36460.1	326	5e-79	protein\|zinc RING finger protein, putative, expressed
Brachypodium v1_2	Bradi4g36320.1	338	2e-91
Arabidopsis v10	AT3G19910.1	340	5e-58	RING/U-box superfamily protein \| chr3:6926497-6929324 FORWARD LENGTH=340