barSeed - Barley Seed Development Database

Probe CUST_30611_PI390587928

Source Contig U35_17772

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30611_PI390587928	Hv_44K_v2	AACTACATACAGTACAAAGCAGGATTAATCGATCGATGGAGGCTTCACGCAAGCTCCTCT	19	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.794	0.663	0.625	1.810	3.267	7.024
Raw	2.828	2.891	3.794	24.600	15.364	37.407

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375848	451	2e-24	32 - 91	100	60 / 60	plus	ABC05903 ABC07615 ABC07616
MLOC	MLOC_8329.1	628	2e-24	448 - 507	100	60 / 60	minus	ABC05903 ABC07615 ABC07616
JLOC1	JLOC1_5531.1	670	8e-25	506 - 565	100	60 / 60	minus
Harvest21	ABC07616	540	3e-25	22 - 81	100	60 / 60	plus	ABC07616
Harvest21	ABC07615	549	3e-25	20 - 79	100	60 / 60	plus	ABC07615
Harvest21	ABC07614	422	3e-25	22 - 81	100	60 / 60	plus
Harvest35	U35_17773	540	3e-25	22 - 81	100	60 / 60	plus
Harvest35	U35_17772	549	3e-25	20 - 79	100	60 / 60	plus
Harvest35	U35_17771	422	3e-25	22 - 81	100	60 / 60	plus

Contig Sequence (549 bp)

>U35_17772 549 Hv_44K_v2
GCCCTGACACACTCGTATAAACTACATACAGTACAAAGCAGGATTAATCGATCGATGGAG
GCTTCACGCAAGCTCCTCTCCGCCGCGCTCTTCCTCGTGCTGCTGCTCGCGGCCACAGGG
GAGATGGGAGGCCCGGTGGCGGTGGCGGAGGCTCGGAGGTGCGAGTTGCCGAGCCACAGG
TTCAGGGGCCCCTGCGTGCGCGGACACAACTGCGCCAACGTCTGCCGGACCGAGGGCTTC
CCCGGCGGCAACTGCCGCGGCCTCCGCCGCCGCTGCTTCTGCGCCACCCACTGCCGCTAC
TAGCCTGCCTCCACTTCGTCCGCACCTTTGTGCGTGTACCGTGTCCGTGTCCGTGTCTGC
GTCAATGTCCATGAATAAACCTCGGCCGGCCTGTCAAGGCCGAGCTGGGTACATGAAAAA
AAAAAAAAAAAAGCTTCTCCTTGTTGTGTCCCTTCGATATCTCGGTTCGTCCTCAGAGTT
GCTGTGAGGTTNNNATCGGTCCGATGCGTATTACCGGATGTTCACTTTTNACAAAAAAAA
AAAAAAAAA

Homology of Contig U35_17772 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None