barSeed - Barley Seed Development Database

Probe CUST_30610_PI390587928

Source Contig U35_17773

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_30610_PI390587928	Hv_44K_v2	GCTGTGAGGTTTGGATCGGTGCGTTGCGTATTATCGGATGTTCATTTTTCTTTCAAAAAA	469	GeneList: midnightblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.293	0.245	0.430	1.949	2.344	3.731
Raw	3.293	3.479	10.429	76.961	30.663	53.905

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC07616	540	1e-23	470 - 529	98	59 / 60	plus	ABC07616
Harvest35	U35_17773	540	3e-25	470 - 529	100	60 / 60	plus

Contig Sequence (540 bp)

>U35_17773 540 Hv_44K_v2
CAACCCTGACACACTCGTATAAACTACATACAGTACAAAGCAGGATTAATCGATCGATGG
AGGCTTCACGCAAGCTCCTCTCCGCCGCGCTCTTCCTCGTGCTGCTGCTCGCGGCCACGG
GGGAGATGGGAGGCCCGGTGGCGGTGGCGGAGGCTCGGAGGTGCGAGTCGCCGAGCCACA
GGTTCAGGGGCCCCTGCGTGCGCGGACACAACTGCGCCAACGTCTGCCGGACCGAGGGCT
TCCCCGGCGGCAACTGCCGCGGCCTCCGCCGCCGCTGCTTCTGCACCACCCACTGCCGCT
ACTAGCCCGCCTCCACTTCGTCCGCACCTTTGTCCGTGTCTGCGTCCATGTCCGTGTCTG
CGTCAATGTCCATGAATAAACCTCGGCCGGCCTGTCAAGGCCGAGCTGGGTACATGAAAT
AGCTTCTCCTTGTTGTGTCCCTTCGATATCTCGGTTCGTCCTCAGAGTTGCTGTGAGGTT
TGGATCGGTGCGTTGCGTATTATCGGATGTTCATTTTTCTTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_17773 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None