- Probe CUST_30604_PI390587928
- Source Contig U35_29750
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30604_PI390587928 | Hv_44K_v2 | ACTCCCGATTCATCAATGGCGTCTAGCGACGAGAAGCCTGTTCCGACGCCGGCCTCAACC | 23 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.251 | 0.321 | 0.848 | 2.436 | 1.423 | 2.215 |
| Raw | 3.242 | 8.419 | 24.014 | 108.812 | 22.674 | 38.053 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_20614.2 | 932 | 2e-24 | 37 - 96 | 100 | 60 / 60 | plus | ABC06445 ABC06446 |
| MLOC | MLOC_20614.1 | 1328 | 2e-24 | 40 - 99 | 100 | 60 / 60 | plus | ABC06445 ABC06446 |
| JLOC1 | JLOC1_14293.1 | 1094 | 8e-25 | 39 - 98 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06446 | 1091 | 3e-25 | 29 - 88 | 100 | 60 / 60 | plus | ABC06446 |
| Harvest21 | ABC06445 | 775 | 3e-25 | 693 - 752 | 100 | 60 / 60 | minus | ABC06445 |
| Harvest35 | U35_29750 | 401 | 3e-25 | 24 - 83 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_2790 | 1074 | 3e-25 | 29 - 88 | 100 | 60 / 60 | plus |
Contig Sequence (401 bp)
>U35_29750 401 Hv_44K_v2 CAGCAGTACAGGCCAACGAGCCGACTCCCGATTCATCAATGGCGTCTAGCGACGAGAAGC CTGTTCCGACGCCGGCCTCAACCGGAGGCGACGGCGGGCCGGCGGGGAAGCCGACGACCA CGTCGACGATGCTGCTCGACAAGGGCGCGGCGGCGCTGCAGTCGCTCCGCCCCGTGAAGC AGATCAAGCAGCACGTGTGCACGTTCGCCCTGTACGCGCACGACCCGCTCGGCGCGCCCG CGCTCATGGTGTCGCCGCAGGCGGAGCGCATCGGCGCCGTGCGCCCGGACCTGGTGCGGA AGCGCGACCAGAAGTACAGCTTCTCCACGGAGGAGCTCAAGGCCGCCAGGGCCGACGTGG ACGTGCCGGCGGAGCCGCGCCCGGGCCAGGCCGACTACTGG
Homology of Contig U35_29750 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |