- Probe CUST_30603_PI390587928
- Source Contig U35_29751
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_30603_PI390587928 | Hv_44K_v2 | GCCTTGCTGCACTGTATGATCACGAGATATACGAGTACAATCTCTGTCATTTCTTTCAAA | 18 | GeneList: darkgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.548 | 1.953 | 3.209 | 2.229 | 0.825 | 0.586 |
| Raw | 7.728 | 46.618 | 61.608 | 68.420 | 8.940 | 5.844 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_75842.2 | 1351 | 7e-23 | 1144 - 1200 | 100 | 57 / 57 | plus | ABC29196 |
| MLOC | MLOC_75842.3 | 1246 | 7e-23 | 1007 - 1063 | 100 | 57 / 57 | plus | ABC29196 |
| JLOC1 | JLOC1_50587.1 | 1134 | 4e-23 | 917 - 973 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC29196 | 482 | 3e-25 | 19 - 78 | 100 | 60 / 60 | minus | ABC29196 |
| Harvest35 | U35_29751 | 482 | 3e-25 | 19 - 78 | 100 | 60 / 60 | minus |
Contig Sequence (482 bp)
>U35_29751 482 Hv_44K_v2 CGCCCTTTTTTTTTTTTTTTTGAAAGAAATGACAGAGATTGTACTCGTATATCTCGTGAT CATACAGTGCAGCAAGGCACAAGAGTCTAACAACAACAGCACCAACATGTACCGTGCAGA TGTGATATGTCCCTTGCCGACAAACACTACTCCACAAGGCCGCTGCCTGCAGAAACGGCG AACATGAAGAAGCCAGGAAACTAAGAACAAAAACTACTTGACAAGTACAGTACATCACAC TGGTATATGCTTATATCCTACTGTATAGGTACATGGAGGACCTGATCAGCCAAGCCTCTT CCATTGCACACATTTTGAAATCAAACTCGGACAGATCAACCGTGTCTACTGATCATTGGG AGGATGGTCTTGGAGCTAGGTTGACGGCCTCGGAGCTCTTCATGAGTCGGATCCGCTTGC AGGACTCGACGAACATTTTCCAGGGGACGTCTCCGACGAGCATCCAGTCGCCGTCCCTGT CC
Homology of Contig U35_29751 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |